miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26231 3' -55.5 NC_005342.2 + 465 0.7 0.377005
Target:  5'- aGUCGGCcgggguguacgagGCCACGGCGCGCGaCgUGCc -3'
miRNA:   3'- -UAGUCGa------------UGGUGUUGCGUGC-GgACGu -5'
26231 3' -55.5 NC_005342.2 + 604 0.67 0.511071
Target:  5'- cUCGGCgACgCGCAGCuGaaugaACGCCUGCGg -3'
miRNA:   3'- uAGUCGaUG-GUGUUG-Cg----UGCGGACGU- -5'
26231 3' -55.5 NC_005342.2 + 780 0.66 0.615694
Target:  5'- gAUUGGCgcCCGCGagcggcgacguagcuGCGguCGCCUGCGc -3'
miRNA:   3'- -UAGUCGauGGUGU---------------UGCguGCGGACGU- -5'
26231 3' -55.5 NC_005342.2 + 1074 0.7 0.389885
Target:  5'- cAUCGGCgcacGCUGCGGCgGCGCGCCaaaUGCGu -3'
miRNA:   3'- -UAGUCGa---UGGUGUUG-CGUGCGG---ACGU- -5'
26231 3' -55.5 NC_005342.2 + 2649 0.7 0.380656
Target:  5'- -cCGGCaGCCuGCAGCGuCGCGCCgGCGg -3'
miRNA:   3'- uaGUCGaUGG-UGUUGC-GUGCGGaCGU- -5'
26231 3' -55.5 NC_005342.2 + 3056 0.7 0.389885
Target:  5'- -aCAGCUGCCGCuGCGCAUcaGCaaGCGc -3'
miRNA:   3'- uaGUCGAUGGUGuUGCGUG--CGgaCGU- -5'
26231 3' -55.5 NC_005342.2 + 3304 0.67 0.564967
Target:  5'- -aUAGCUGCCGacuucuuCGGCGCGCGCgacGCAu -3'
miRNA:   3'- uaGUCGAUGGU-------GUUGCGUGCGga-CGU- -5'
26231 3' -55.5 NC_005342.2 + 3351 0.66 0.599837
Target:  5'- gAUCAGCUGgCGCAGCGa--GUCggGCAg -3'
miRNA:   3'- -UAGUCGAUgGUGUUGCgugCGGa-CGU- -5'
26231 3' -55.5 NC_005342.2 + 4815 0.71 0.304359
Target:  5'- aGUCGGCUgACCGuacGCGCGCGCCgUGCc -3'
miRNA:   3'- -UAGUCGA-UGGUgu-UGCGUGCGG-ACGu -5'
26231 3' -55.5 NC_005342.2 + 4818 0.67 0.566085
Target:  5'- cGUCAGCccgACCcgAGCGUcUGCCUGCGc -3'
miRNA:   3'- -UAGUCGa--UGGugUUGCGuGCGGACGU- -5'
26231 3' -55.5 NC_005342.2 + 4850 0.67 0.566085
Target:  5'- ---cGCUGCCGCcgcugaccauguAGCGCGCG-CUGCGa -3'
miRNA:   3'- uaguCGAUGGUG------------UUGCGUGCgGACGU- -5'
26231 3' -55.5 NC_005342.2 + 6566 0.67 0.554936
Target:  5'- cAUC-GCcGCCACGGCGCGcCGCCcaGCGc -3'
miRNA:   3'- -UAGuCGaUGGUGUUGCGU-GCGGa-CGU- -5'
26231 3' -55.5 NC_005342.2 + 6822 0.72 0.260354
Target:  5'- cGUCGGCUACCgGCGGC-UGCGCaCUGCAu -3'
miRNA:   3'- -UAGUCGAUGG-UGUUGcGUGCG-GACGU- -5'
26231 3' -55.5 NC_005342.2 + 7435 0.7 0.357353
Target:  5'- gAUCAGCUccaucgacggggcgaGCgACAugACGCGUGCCUGCGg -3'
miRNA:   3'- -UAGUCGA---------------UGgUGU--UGCGUGCGGACGU- -5'
26231 3' -55.5 NC_005342.2 + 7799 0.72 0.281676
Target:  5'- uUCAGCUcgcucGCCAgauCGACGCG-GCCUGCGc -3'
miRNA:   3'- uAGUCGA-----UGGU---GUUGCGUgCGGACGU- -5'
26231 3' -55.5 NC_005342.2 + 8963 0.69 0.418434
Target:  5'- -gCAGCcaaccugcgAUCGCGGCGCguGCGCCUGCc -3'
miRNA:   3'- uaGUCGa--------UGGUGUUGCG--UGCGGACGu -5'
26231 3' -55.5 NC_005342.2 + 9057 0.69 0.408777
Target:  5'- ---uGCUGCCgguGCAGCGCGCGCa-GCAc -3'
miRNA:   3'- uaguCGAUGG---UGUUGCGUGCGgaCGU- -5'
26231 3' -55.5 NC_005342.2 + 9131 0.73 0.233994
Target:  5'- -cCuGCUcgACCGCAGCuGCGCGCUUGCGu -3'
miRNA:   3'- uaGuCGA--UGGUGUUG-CGUGCGGACGU- -5'
26231 3' -55.5 NC_005342.2 + 9471 0.68 0.458405
Target:  5'- cUCgAGCUucugcagaAUCGCuGCGUGCGCCUGCGc -3'
miRNA:   3'- uAG-UCGA--------UGGUGuUGCGUGCGGACGU- -5'
26231 3' -55.5 NC_005342.2 + 9604 0.77 0.137841
Target:  5'- -cCGGCUGCCG--GCgGCGCGCCUGCGc -3'
miRNA:   3'- uaGUCGAUGGUguUG-CGUGCGGACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.