miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26231 5' -53.1 NC_005342.2 + 27516 0.66 0.820059
Target:  5'- cGGCGCaggcuucgcgccgccGAACGUGUuuuCGAagGCGGUGa- -3'
miRNA:   3'- -CCGCG---------------CUUGCACG---GCUagCGCUAUau -5'
26231 5' -53.1 NC_005342.2 + 29641 0.66 0.817217
Target:  5'- cGGCGUGAggaucgugcgcacgcGCGUGCCGGcgaagaacuUCGCcuugaucguuugcaGGUGUGc -3'
miRNA:   3'- -CCGCGCU---------------UGCACGGCU---------AGCG--------------CUAUAU- -5'
26231 5' -53.1 NC_005342.2 + 10015 0.66 0.816266
Target:  5'- cGGCGCGGcGCGcuUGCuCGAcUCGgGGUAUu -3'
miRNA:   3'- -CCGCGCU-UGC--ACG-GCU-AGCgCUAUAu -5'
26231 5' -53.1 NC_005342.2 + 2543 0.66 0.816266
Target:  5'- aGGCGUGcguuGugGUaGCUGAUCGCGc---- -3'
miRNA:   3'- -CCGCGC----UugCA-CGGCUAGCGCuauau -5'
26231 5' -53.1 NC_005342.2 + 25746 0.66 0.816266
Target:  5'- cGGCGUGAAg--GUCGGUUGCGGg--- -3'
miRNA:   3'- -CCGCGCUUgcaCGGCUAGCGCUauau -5'
26231 5' -53.1 NC_005342.2 + 24545 0.66 0.812441
Target:  5'- cGGCGgGuACGUGCCGGgcuaccaguacggCGUGAc--- -3'
miRNA:   3'- -CCGCgCuUGCACGGCUa------------GCGCUauau -5'
26231 5' -53.1 NC_005342.2 + 33125 0.66 0.806644
Target:  5'- cGGCGCGGcgacuGCGcGCCGAaccguagcCGCGAg--- -3'
miRNA:   3'- -CCGCGCU-----UGCaCGGCUa-------GCGCUauau -5'
26231 5' -53.1 NC_005342.2 + 17661 0.66 0.806644
Target:  5'- cGGCGa-AGCG-GUCGAugUCGCGGUGUu -3'
miRNA:   3'- -CCGCgcUUGCaCGGCU--AGCGCUAUAu -5'
26231 5' -53.1 NC_005342.2 + 36150 0.66 0.806644
Target:  5'- cGGCGCaagcugGAGCGcGCCG-UCGCGcugAUGg -3'
miRNA:   3'- -CCGCG------CUUGCaCGGCuAGCGCua-UAU- -5'
26231 5' -53.1 NC_005342.2 + 41382 0.66 0.806644
Target:  5'- cGGCGCuGGGCGgcgcGCCGuggCgGCGAUGc- -3'
miRNA:   3'- -CCGCG-CUUGCa---CGGCua-G-CGCUAUau -5'
26231 5' -53.1 NC_005342.2 + 14791 0.66 0.786839
Target:  5'- cGGCGCGccgcugccAAUGcUGCCGGacUCGCGGc--- -3'
miRNA:   3'- -CCGCGC--------UUGC-ACGGCU--AGCGCUauau -5'
26231 5' -53.1 NC_005342.2 + 45680 0.66 0.786839
Target:  5'- -aCGCGGGCGUGCCGGccacggCGCa----- -3'
miRNA:   3'- ccGCGCUUGCACGGCUa-----GCGcuauau -5'
26231 5' -53.1 NC_005342.2 + 11682 0.66 0.786839
Target:  5'- aGCGcCGGgcgGCGUGCUGGcguccugCGCGAUGUc -3'
miRNA:   3'- cCGC-GCU---UGCACGGCUa------GCGCUAUAu -5'
26231 5' -53.1 NC_005342.2 + 33071 0.66 0.78583
Target:  5'- cGGCGCGccguCGUGgaacgccugcugcCCGAUCGCG-UAg- -3'
miRNA:   3'- -CCGCGCuu--GCAC-------------GGCUAGCGCuAUau -5'
26231 5' -53.1 NC_005342.2 + 36064 0.66 0.776678
Target:  5'- uGGCGCGcGCGccgcugcgcaUGCCGGgcCGCGAc--- -3'
miRNA:   3'- -CCGCGCuUGC----------ACGGCUa-GCGCUauau -5'
26231 5' -53.1 NC_005342.2 + 43326 0.66 0.776678
Target:  5'- cGCGCGccGGCcUGCCcgucgccauGAUCGCGAUGg- -3'
miRNA:   3'- cCGCGC--UUGcACGG---------CUAGCGCUAUau -5'
26231 5' -53.1 NC_005342.2 + 39489 0.67 0.76636
Target:  5'- -aCGCGGACGUuguggcuggcucGCCG-UCGCGAgGUAc -3'
miRNA:   3'- ccGCGCUUGCA------------CGGCuAGCGCUaUAU- -5'
26231 5' -53.1 NC_005342.2 + 27391 0.67 0.76636
Target:  5'- cGGCGCGAcccgACGcGCCGAcgaUCaGCGGc--- -3'
miRNA:   3'- -CCGCGCU----UGCaCGGCU---AG-CGCUauau -5'
26231 5' -53.1 NC_005342.2 + 37520 0.67 0.76636
Target:  5'- cGGCGCGAuGCGaaGCgCG-UCGCGAUcgAg -3'
miRNA:   3'- -CCGCGCU-UGCa-CG-GCuAGCGCUAuaU- -5'
26231 5' -53.1 NC_005342.2 + 770 0.67 0.76636
Target:  5'- ---uUGAGCGUGCCGGUCGCc----- -3'
miRNA:   3'- ccgcGCUUGCACGGCUAGCGcuauau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.