miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26231 5' -53.1 NC_005342.2 + 45448 1.09 0.001401
Target:  5'- cGGCGCGAACGUGCCGAUCGCGAUAUAc -3'
miRNA:   3'- -CCGCGCUUGCACGGCUAGCGCUAUAU- -5'
26231 5' -53.1 NC_005342.2 + 23231 0.77 0.230625
Target:  5'- cGGCgGCGAACGcGCCGGUCGUGuUGUu -3'
miRNA:   3'- -CCG-CGCUUGCaCGGCUAGCGCuAUAu -5'
26231 5' -53.1 NC_005342.2 + 489 0.77 0.230625
Target:  5'- cGGCGCGcGACGUGCCGGcgagCGUGAa--- -3'
miRNA:   3'- -CCGCGC-UUGCACGGCUa---GCGCUauau -5'
26231 5' -53.1 NC_005342.2 + 29666 0.77 0.24977
Target:  5'- uGCGCGAgaagcGCGUGCCGAgCGCGGc--- -3'
miRNA:   3'- cCGCGCU-----UGCACGGCUaGCGCUauau -5'
26231 5' -53.1 NC_005342.2 + 20444 0.75 0.299524
Target:  5'- cGGCGCGAAgccUGcGCCGGUCGUGAc--- -3'
miRNA:   3'- -CCGCGCUU---GCaCGGCUAGCGCUauau -5'
26231 5' -53.1 NC_005342.2 + 27605 0.75 0.307227
Target:  5'- cGGCGUucACGaaGCCGGUCGCGGUAc- -3'
miRNA:   3'- -CCGCGcuUGCa-CGGCUAGCGCUAUau -5'
26231 5' -53.1 NC_005342.2 + 39055 0.75 0.315081
Target:  5'- cGGCGCGAACGaaGCCGcGUCGCGc---- -3'
miRNA:   3'- -CCGCGCUUGCa-CGGC-UAGCGCuauau -5'
26231 5' -53.1 NC_005342.2 + 8658 0.75 0.315081
Target:  5'- cGGCguucagcacgGCGAACGUGCCGAcCGUGAc--- -3'
miRNA:   3'- -CCG----------CGCUUGCACGGCUaGCGCUauau -5'
26231 5' -53.1 NC_005342.2 + 27717 0.74 0.356608
Target:  5'- cGGCGCGAuCGUagGCCaGUCGCGGUcgAu -3'
miRNA:   3'- -CCGCGCUuGCA--CGGcUAGCGCUAuaU- -5'
26231 5' -53.1 NC_005342.2 + 29535 0.73 0.383309
Target:  5'- cGGUGUcGACGccGCCGAUCGCGAg--- -3'
miRNA:   3'- -CCGCGcUUGCa-CGGCUAGCGCUauau -5'
26231 5' -53.1 NC_005342.2 + 9164 0.73 0.411304
Target:  5'- -uCGCGAcgGCaGUGUCGAUCGCGGUGc- -3'
miRNA:   3'- ccGCGCU--UG-CACGGCUAGCGCUAUau -5'
26231 5' -53.1 NC_005342.2 + 41334 0.72 0.430658
Target:  5'- cGCGcCGAGCGcgcUGCCGAgCGCGAUcgAg -3'
miRNA:   3'- cCGC-GCUUGC---ACGGCUaGCGCUAuaU- -5'
26231 5' -53.1 NC_005342.2 + 30830 0.72 0.460662
Target:  5'- cGGCGCGAGCugcUGCuCGcgCGCGAg--- -3'
miRNA:   3'- -CCGCGCUUGc--ACG-GCuaGCGCUauau -5'
26231 5' -53.1 NC_005342.2 + 7194 0.72 0.460662
Target:  5'- cGGCGCGaAACGUGUCGAcgaUCGUGc---- -3'
miRNA:   3'- -CCGCGC-UUGCACGGCU---AGCGCuauau -5'
26231 5' -53.1 NC_005342.2 + 671 0.72 0.470907
Target:  5'- aGCGCGAuCGUGCCGccgccCGCGAg--- -3'
miRNA:   3'- cCGCGCUuGCACGGCua---GCGCUauau -5'
26231 5' -53.1 NC_005342.2 + 11608 0.71 0.481267
Target:  5'- cGCGCGAACGUGUCGAaguagCGCu----- -3'
miRNA:   3'- cCGCGCUUGCACGGCUa----GCGcuauau -5'
26231 5' -53.1 NC_005342.2 + 34984 0.71 0.491736
Target:  5'- cGGCGCGAACGUcgauuuGUCGAUgCGCGc---- -3'
miRNA:   3'- -CCGCGCUUGCA------CGGCUA-GCGCuauau -5'
26231 5' -53.1 NC_005342.2 + 1095 0.71 0.51298
Target:  5'- cGCGCGAAgucggugcCGUGCUGcgCGCGAc--- -3'
miRNA:   3'- cCGCGCUU--------GCACGGCuaGCGCUauau -5'
26231 5' -53.1 NC_005342.2 + 35201 0.71 0.51298
Target:  5'- gGGCcgGUGAGCGUGCCGccUGCGAg--- -3'
miRNA:   3'- -CCG--CGCUUGCACGGCuaGCGCUauau -5'
26231 5' -53.1 NC_005342.2 + 28198 0.7 0.545518
Target:  5'- uGCGUugGAGCG-GCCGAUCGCGu---- -3'
miRNA:   3'- cCGCG--CUUGCaCGGCUAGCGCuauau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.