miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26232 3' -56.8 NC_005342.2 + 16920 0.66 0.626492
Target:  5'- --cCGGCauugcGGGCGCcgUGCUCGgcgucggcgcAGGUGCg -3'
miRNA:   3'- gauGCUGc----UCCGCG--ACGAGC----------UCCACG- -5'
26232 3' -56.8 NC_005342.2 + 17009 0.66 0.626492
Target:  5'- gCUGCaGGCcaauGGCGUcaUGCUCGcGGUGUu -3'
miRNA:   3'- -GAUG-CUGcu--CCGCG--ACGAGCuCCACG- -5'
26232 3' -56.8 NC_005342.2 + 47838 0.66 0.626492
Target:  5'- --cCGACGAGGCGCagGCggcaacCGGGcGcGCg -3'
miRNA:   3'- gauGCUGCUCCGCGa-CGa-----GCUC-CaCG- -5'
26232 3' -56.8 NC_005342.2 + 17564 0.66 0.615528
Target:  5'- --cCGGCGGcGGCGCgaacgGCUucaUGAaGGUGCu -3'
miRNA:   3'- gauGCUGCU-CCGCGa----CGA---GCU-CCACG- -5'
26232 3' -56.8 NC_005342.2 + 22895 0.66 0.615528
Target:  5'- --gUGACGAgcagaagcgcGGUGCUgccGCUCGAGuuGUGCa -3'
miRNA:   3'- gauGCUGCU----------CCGCGA---CGAGCUC--CACG- -5'
26232 3' -56.8 NC_005342.2 + 445 0.66 0.604579
Target:  5'- -cGCGGCGAuGUGCUuggcacagucgGC-CGGGGUGUa -3'
miRNA:   3'- gaUGCUGCUcCGCGA-----------CGaGCUCCACG- -5'
26232 3' -56.8 NC_005342.2 + 35786 0.66 0.602392
Target:  5'- aUACGACGAgcuggcccgugacgcGGCGCUGCgCGccagccacguacgcaAGGUugGCg -3'
miRNA:   3'- gAUGCUGCU---------------CCGCGACGaGC---------------UCCA--CG- -5'
26232 3' -56.8 NC_005342.2 + 19926 0.66 0.593654
Target:  5'- -gACGACGAGcGCGCcggGCggCGAGccGCc -3'
miRNA:   3'- gaUGCUGCUC-CGCGa--CGa-GCUCcaCG- -5'
26232 3' -56.8 NC_005342.2 + 41211 0.66 0.593654
Target:  5'- aUGCGAucggcuaccuCGAGGCGC-GCgacCGGGGcGCc -3'
miRNA:   3'- gAUGCU----------GCUCCGCGaCGa--GCUCCaCG- -5'
26232 3' -56.8 NC_005342.2 + 10862 0.66 0.58276
Target:  5'- -gACGAUGAGGacgGCcGCgCGAcgcGGUGCa -3'
miRNA:   3'- gaUGCUGCUCCg--CGaCGaGCU---CCACG- -5'
26232 3' -56.8 NC_005342.2 + 35585 0.67 0.561104
Target:  5'- -gGCGGCGAcacuGGCGC-GCcgggCGGGGcGCg -3'
miRNA:   3'- gaUGCUGCU----CCGCGaCGa---GCUCCaCG- -5'
26232 3' -56.8 NC_005342.2 + 1085 0.67 0.550357
Target:  5'- gCUGCGGCGGcGCGCcaaaUGCgUCGAGuaaccGUGCc -3'
miRNA:   3'- -GAUGCUGCUcCGCG----ACG-AGCUC-----CACG- -5'
26232 3' -56.8 NC_005342.2 + 45686 0.67 0.539674
Target:  5'- -cGCGGCGAGGCGUggugucccggccUGCcacucggcgcCGAGGgcugGCa -3'
miRNA:   3'- gaUGCUGCUCCGCG------------ACGa---------GCUCCa---CG- -5'
26232 3' -56.8 NC_005342.2 + 44091 0.67 0.539674
Target:  5'- ---gGACaGGuGCGCUGCUCGGcGGcGCg -3'
miRNA:   3'- gaugCUGcUC-CGCGACGAGCU-CCaCG- -5'
26232 3' -56.8 NC_005342.2 + 41334 0.67 0.529063
Target:  5'- -cGCGcCGAGcGCGCUGC-CGAGc-GCg -3'
miRNA:   3'- gaUGCuGCUC-CGCGACGaGCUCcaCG- -5'
26232 3' -56.8 NC_005342.2 + 19348 0.67 0.522732
Target:  5'- cCUGCGcCGAGcGCgaccgugcggcacgaGC-GCUCGAGcGUGCa -3'
miRNA:   3'- -GAUGCuGCUC-CG---------------CGaCGAGCUC-CACG- -5'
26232 3' -56.8 NC_005342.2 + 47227 0.67 0.518529
Target:  5'- -gGCGGCGAcugccGCGCUGaaCGAGGcGCc -3'
miRNA:   3'- gaUGCUGCUc----CGCGACgaGCUCCaCG- -5'
26232 3' -56.8 NC_005342.2 + 13818 0.67 0.508079
Target:  5'- -gGCGACG-GGCGCcGCgUCGAGc-GCa -3'
miRNA:   3'- gaUGCUGCuCCGCGaCG-AGCUCcaCG- -5'
26232 3' -56.8 NC_005342.2 + 10013 0.67 0.508079
Target:  5'- -aACGGCGcGGCGCgcuUGCUCGAcucGGgGUa -3'
miRNA:   3'- gaUGCUGCuCCGCG---ACGAGCU---CCaCG- -5'
26232 3' -56.8 NC_005342.2 + 6879 0.68 0.497719
Target:  5'- uUGCGGuCG-GGCGCgUGCUCGAGc-GCc -3'
miRNA:   3'- gAUGCU-GCuCCGCG-ACGAGCUCcaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.