miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26232 3' -56.8 NC_005342.2 + 45609 1.11 0.000449
Target:  5'- uCUACGACGAGGCGCUGCUCGAGGUGCu -3'
miRNA:   3'- -GAUGCUGCUCCGCGACGAGCUCCACG- -5'
26232 3' -56.8 NC_005342.2 + 41815 0.84 0.044639
Target:  5'- -cGCGACGAGGCGUgucgCGAGGUGCg -3'
miRNA:   3'- gaUGCUGCUCCGCGacgaGCUCCACG- -5'
26232 3' -56.8 NC_005342.2 + 8971 0.79 0.092008
Target:  5'- cCUGCGAuCGcGGCGCgugcgccugccggccGCUCGGGGUGCg -3'
miRNA:   3'- -GAUGCU-GCuCCGCGa--------------CGAGCUCCACG- -5'
26232 3' -56.8 NC_005342.2 + 38742 0.71 0.307232
Target:  5'- -cGCGGCGAGGCGCccccguucgGCgCGAuggaugcgaagucGGUGCg -3'
miRNA:   3'- gaUGCUGCUCCGCGa--------CGaGCU-------------CCACG- -5'
26232 3' -56.8 NC_005342.2 + 47816 0.71 0.331424
Target:  5'- -cGCGAUGucGUGCUGCUC--GGUGCc -3'
miRNA:   3'- gaUGCUGCucCGCGACGAGcuCCACG- -5'
26232 3' -56.8 NC_005342.2 + 41139 0.7 0.347761
Target:  5'- -cAUGAuCGAacaGGCGCUGCUCGAcgcGG-GCg -3'
miRNA:   3'- gaUGCU-GCU---CCGCGACGAGCU---CCaCG- -5'
26232 3' -56.8 NC_005342.2 + 40340 0.7 0.347761
Target:  5'- -aACGAaguCGucGCGCUGUUCcAGGUGCu -3'
miRNA:   3'- gaUGCU---GCucCGCGACGAGcUCCACG- -5'
26232 3' -56.8 NC_005342.2 + 20268 0.7 0.391068
Target:  5'- cCUACGACGucuCGCUGCagcgCGuucAGGUGCg -3'
miRNA:   3'- -GAUGCUGCuccGCGACGa---GC---UCCACG- -5'
26232 3' -56.8 NC_005342.2 + 8620 0.69 0.409348
Target:  5'- gCU-CGGCGcGGCGCccggcuUGCUCGugacGGUGCc -3'
miRNA:   3'- -GAuGCUGCuCCGCG------ACGAGCu---CCACG- -5'
26232 3' -56.8 NC_005342.2 + 27427 0.69 0.410276
Target:  5'- -gGCGACGgcugucgaccAGGCGCcauucggguaguucgGCUCGAGcGUGUg -3'
miRNA:   3'- gaUGCUGC----------UCCGCGa--------------CGAGCUC-CACG- -5'
26232 3' -56.8 NC_005342.2 + 30363 0.69 0.418686
Target:  5'- -cGCGGCGu-GCGCUGCUCGAGc--- -3'
miRNA:   3'- gaUGCUGCucCGCGACGAGCUCcacg -5'
26232 3' -56.8 NC_005342.2 + 30983 0.69 0.437743
Target:  5'- -cGCGGCGAcGGCGUaUGCcgCGAGuUGCg -3'
miRNA:   3'- gaUGCUGCU-CCGCG-ACGa-GCUCcACG- -5'
26232 3' -56.8 NC_005342.2 + 15867 0.68 0.457289
Target:  5'- --cCGACGcGGCGCUGaaCGucGUGCu -3'
miRNA:   3'- gauGCUGCuCCGCGACgaGCucCACG- -5'
26232 3' -56.8 NC_005342.2 + 31141 0.68 0.467236
Target:  5'- cCUugGccGCGAcGCGCUGCUCGAGcGa-- -3'
miRNA:   3'- -GAugC--UGCUcCGCGACGAGCUC-Cacg -5'
26232 3' -56.8 NC_005342.2 + 44153 0.68 0.467236
Target:  5'- -cGCGuGCGAGGCGCUugGCcUGccGGUGCa -3'
miRNA:   3'- gaUGC-UGCUCCGCGA--CGaGCu-CCACG- -5'
26232 3' -56.8 NC_005342.2 + 14137 0.68 0.467236
Target:  5'- -gACGACG-GGCccgaugccggGCcGCUCGuccGGGUGCg -3'
miRNA:   3'- gaUGCUGCuCCG----------CGaCGAGC---UCCACG- -5'
26232 3' -56.8 NC_005342.2 + 18847 0.68 0.477292
Target:  5'- gCUACGcCGucugcuucgccGGCaacgaGCcGCUCGAGGUGCg -3'
miRNA:   3'- -GAUGCuGCu----------CCG-----CGaCGAGCUCCACG- -5'
26232 3' -56.8 NC_005342.2 + 38028 0.68 0.487456
Target:  5'- -cGCGGCGAccGGCGaaaUGCgccUCGAgGGUGUg -3'
miRNA:   3'- gaUGCUGCU--CCGCg--ACG---AGCU-CCACG- -5'
26232 3' -56.8 NC_005342.2 + 5565 0.68 0.496689
Target:  5'- -gGCGugGAgacgaucGGCGCUGUUgCGGGcUGCu -3'
miRNA:   3'- gaUGCugCU-------CCGCGACGA-GCUCcACG- -5'
26232 3' -56.8 NC_005342.2 + 6879 0.68 0.497719
Target:  5'- uUGCGGuCG-GGCGCgUGCUCGAGc-GCc -3'
miRNA:   3'- gAUGCU-GCuCCGCG-ACGAGCUCcaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.