Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26232 | 3' | -56.8 | NC_005342.2 | + | 445 | 0.66 | 0.604579 |
Target: 5'- -cGCGGCGAuGUGCUuggcacagucgGC-CGGGGUGUa -3' miRNA: 3'- gaUGCUGCUcCGCGA-----------CGaGCUCCACG- -5' |
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26232 | 3' | -56.8 | NC_005342.2 | + | 1085 | 0.67 | 0.550357 |
Target: 5'- gCUGCGGCGGcGCGCcaaaUGCgUCGAGuaaccGUGCc -3' miRNA: 3'- -GAUGCUGCUcCGCG----ACG-AGCUC-----CACG- -5' |
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26232 | 3' | -56.8 | NC_005342.2 | + | 5565 | 0.68 | 0.496689 |
Target: 5'- -gGCGugGAgacgaucGGCGCUGUUgCGGGcUGCu -3' miRNA: 3'- gaUGCugCU-------CCGCGACGA-GCUCcACG- -5' |
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26232 | 3' | -56.8 | NC_005342.2 | + | 6879 | 0.68 | 0.497719 |
Target: 5'- uUGCGGuCG-GGCGCgUGCUCGAGc-GCc -3' miRNA: 3'- gAUGCU-GCuCCGCG-ACGAGCUCcaCG- -5' |
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26232 | 3' | -56.8 | NC_005342.2 | + | 8620 | 0.69 | 0.409348 |
Target: 5'- gCU-CGGCGcGGCGCccggcuUGCUCGugacGGUGCc -3' miRNA: 3'- -GAuGCUGCuCCGCG------ACGAGCu---CCACG- -5' |
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26232 | 3' | -56.8 | NC_005342.2 | + | 8971 | 0.79 | 0.092008 |
Target: 5'- cCUGCGAuCGcGGCGCgugcgccugccggccGCUCGGGGUGCg -3' miRNA: 3'- -GAUGCU-GCuCCGCGa--------------CGAGCUCCACG- -5' |
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26232 | 3' | -56.8 | NC_005342.2 | + | 10013 | 0.67 | 0.508079 |
Target: 5'- -aACGGCGcGGCGCgcuUGCUCGAcucGGgGUa -3' miRNA: 3'- gaUGCUGCuCCGCG---ACGAGCU---CCaCG- -5' |
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26232 | 3' | -56.8 | NC_005342.2 | + | 10862 | 0.66 | 0.58276 |
Target: 5'- -gACGAUGAGGacgGCcGCgCGAcgcGGUGCa -3' miRNA: 3'- gaUGCUGCUCCg--CGaCGaGCU---CCACG- -5' |
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26232 | 3' | -56.8 | NC_005342.2 | + | 13818 | 0.67 | 0.508079 |
Target: 5'- -gGCGACG-GGCGCcGCgUCGAGc-GCa -3' miRNA: 3'- gaUGCUGCuCCGCGaCG-AGCUCcaCG- -5' |
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26232 | 3' | -56.8 | NC_005342.2 | + | 14137 | 0.68 | 0.467236 |
Target: 5'- -gACGACG-GGCccgaugccggGCcGCUCGuccGGGUGCg -3' miRNA: 3'- gaUGCUGCuCCG----------CGaCGAGC---UCCACG- -5' |
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26232 | 3' | -56.8 | NC_005342.2 | + | 15867 | 0.68 | 0.457289 |
Target: 5'- --cCGACGcGGCGCUGaaCGucGUGCu -3' miRNA: 3'- gauGCUGCuCCGCGACgaGCucCACG- -5' |
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26232 | 3' | -56.8 | NC_005342.2 | + | 16920 | 0.66 | 0.626492 |
Target: 5'- --cCGGCauugcGGGCGCcgUGCUCGgcgucggcgcAGGUGCg -3' miRNA: 3'- gauGCUGc----UCCGCG--ACGAGC----------UCCACG- -5' |
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26232 | 3' | -56.8 | NC_005342.2 | + | 17009 | 0.66 | 0.626492 |
Target: 5'- gCUGCaGGCcaauGGCGUcaUGCUCGcGGUGUu -3' miRNA: 3'- -GAUG-CUGcu--CCGCG--ACGAGCuCCACG- -5' |
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26232 | 3' | -56.8 | NC_005342.2 | + | 17564 | 0.66 | 0.615528 |
Target: 5'- --cCGGCGGcGGCGCgaacgGCUucaUGAaGGUGCu -3' miRNA: 3'- gauGCUGCU-CCGCGa----CGA---GCU-CCACG- -5' |
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26232 | 3' | -56.8 | NC_005342.2 | + | 18847 | 0.68 | 0.477292 |
Target: 5'- gCUACGcCGucugcuucgccGGCaacgaGCcGCUCGAGGUGCg -3' miRNA: 3'- -GAUGCuGCu----------CCG-----CGaCGAGCUCCACG- -5' |
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26232 | 3' | -56.8 | NC_005342.2 | + | 19348 | 0.67 | 0.522732 |
Target: 5'- cCUGCGcCGAGcGCgaccgugcggcacgaGC-GCUCGAGcGUGCa -3' miRNA: 3'- -GAUGCuGCUC-CG---------------CGaCGAGCUC-CACG- -5' |
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26232 | 3' | -56.8 | NC_005342.2 | + | 19926 | 0.66 | 0.593654 |
Target: 5'- -gACGACGAGcGCGCcggGCggCGAGccGCc -3' miRNA: 3'- gaUGCUGCUC-CGCGa--CGa-GCUCcaCG- -5' |
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26232 | 3' | -56.8 | NC_005342.2 | + | 20268 | 0.7 | 0.391068 |
Target: 5'- cCUACGACGucuCGCUGCagcgCGuucAGGUGCg -3' miRNA: 3'- -GAUGCUGCuccGCGACGa---GC---UCCACG- -5' |
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26232 | 3' | -56.8 | NC_005342.2 | + | 22895 | 0.66 | 0.615528 |
Target: 5'- --gUGACGAgcagaagcgcGGUGCUgccGCUCGAGuuGUGCa -3' miRNA: 3'- gauGCUGCU----------CCGCGA---CGAGCUC--CACG- -5' |
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26232 | 3' | -56.8 | NC_005342.2 | + | 27427 | 0.69 | 0.410276 |
Target: 5'- -gGCGACGgcugucgaccAGGCGCcauucggguaguucgGCUCGAGcGUGUg -3' miRNA: 3'- gaUGCUGC----------UCCGCGa--------------CGAGCUC-CACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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