miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26232 5' -56.9 NC_005342.2 + 35805 0.66 0.572952
Target:  5'- -cGC-CGgaAGAAGCGGCUCGgcgCGAGaCa -3'
miRNA:   3'- aaCGcGC--UCUUCGUCGAGCa--GCUC-Gc -5'
26232 5' -56.9 NC_005342.2 + 29967 0.66 0.572952
Target:  5'- -aGCGCGuucauGAcauacaGGCGGUugUCGUCGAGUu -3'
miRNA:   3'- aaCGCGCu----CU------UCGUCG--AGCAGCUCGc -5'
26232 5' -56.9 NC_005342.2 + 30351 0.66 0.572952
Target:  5'- -aGCGCGgcaAGgcGCGGCgugCGcugcUCGAGCa -3'
miRNA:   3'- aaCGCGC---UCuuCGUCGa--GC----AGCUCGc -5'
26232 5' -56.9 NC_005342.2 + 26182 0.66 0.572952
Target:  5'- -cGCGCGGcacuucgccGAA-UGGCUUGUCGAGCu -3'
miRNA:   3'- aaCGCGCU---------CUUcGUCGAGCAGCUCGc -5'
26232 5' -56.9 NC_005342.2 + 8909 0.66 0.551054
Target:  5'- gUGCGuCGuAGAAGCGcGCcgcCGcCGAGCGa -3'
miRNA:   3'- aACGC-GC-UCUUCGU-CGa--GCaGCUCGC- -5'
26232 5' -56.9 NC_005342.2 + 41232 0.66 0.528344
Target:  5'- -cGCGCGAccGggGCGccguggcGCUCGaaUUGAGCa -3'
miRNA:   3'- aaCGCGCU--CuuCGU-------CGAGC--AGCUCGc -5'
26232 5' -56.9 NC_005342.2 + 19357 0.66 0.518717
Target:  5'- -aGCGCGAccguGCGGCacgagCGcUCGAGCGu -3'
miRNA:   3'- aaCGCGCUcuu-CGUCGa----GC-AGCUCGC- -5'
26232 5' -56.9 NC_005342.2 + 3361 0.67 0.508102
Target:  5'- -cGCaGCGAGucgGGCAGgUUGUCGcGCGc -3'
miRNA:   3'- aaCG-CGCUCu--UCGUCgAGCAGCuCGC- -5'
26232 5' -56.9 NC_005342.2 + 21717 0.67 0.476839
Target:  5'- -cGUGCGcc-AGCAGCUCGaCGcAGCGa -3'
miRNA:   3'- aaCGCGCucuUCGUCGAGCaGC-UCGC- -5'
26232 5' -56.9 NC_005342.2 + 25491 0.67 0.476839
Target:  5'- gUUGCGCGucauGAAGUAGaugCGgcCGAGCGc -3'
miRNA:   3'- -AACGCGCu---CUUCGUCga-GCa-GCUCGC- -5'
26232 5' -56.9 NC_005342.2 + 263 0.67 0.476839
Target:  5'- -aGCGCGccGAGCAGCUUGcCGAauaGCa -3'
miRNA:   3'- aaCGCGCucUUCGUCGAGCaGCU---CGc -5'
26232 5' -56.9 NC_005342.2 + 33059 0.67 0.46663
Target:  5'- gUUGCGCGAGAacGGCGcGC-CGUCGuGg- -3'
miRNA:   3'- -AACGCGCUCU--UCGU-CGaGCAGCuCgc -5'
26232 5' -56.9 NC_005342.2 + 29072 0.68 0.46056
Target:  5'- -cGCGCGGcuGcuuaacacgcaccucGAGCGGCUCGUUGccGGCGa -3'
miRNA:   3'- aaCGCGCU--C---------------UUCGUCGAGCAGC--UCGC- -5'
26232 5' -56.9 NC_005342.2 + 36591 0.68 0.456535
Target:  5'- -gGcCGCGAccuGAaagGGCugcaagaaaAGCUCGUCGAGCGc -3'
miRNA:   3'- aaC-GCGCU---CU---UCG---------UCGAGCAGCUCGC- -5'
26232 5' -56.9 NC_005342.2 + 1392 0.68 0.446559
Target:  5'- -gGCGuCGAuGAGCAGCUUGUgccguucgaugcCGAGCa -3'
miRNA:   3'- aaCGC-GCUcUUCGUCGAGCA------------GCUCGc -5'
26232 5' -56.9 NC_005342.2 + 25026 0.68 0.446559
Target:  5'- gUGCGCcGGAaucgGGUAGUUCGUCGcGCc -3'
miRNA:   3'- aACGCGcUCU----UCGUCGAGCAGCuCGc -5'
26232 5' -56.9 NC_005342.2 + 31998 0.68 0.446559
Target:  5'- -gGCGCGGGucGGCGGCgaUGUCGAcguGCGu -3'
miRNA:   3'- aaCGCGCUCu-UCGUCGa-GCAGCU---CGC- -5'
26232 5' -56.9 NC_005342.2 + 13620 0.68 0.41738
Target:  5'- -cGCGCGGuacucGGGCAGCUgCG-CGAGCa -3'
miRNA:   3'- aaCGCGCUc----UUCGUCGA-GCaGCUCGc -5'
26232 5' -56.9 NC_005342.2 + 21001 0.68 0.407916
Target:  5'- -aGCGCGu--GGCAGC-CGUcaCGGGCGa -3'
miRNA:   3'- aaCGCGCucuUCGUCGaGCA--GCUCGC- -5'
26232 5' -56.9 NC_005342.2 + 17121 0.69 0.389394
Target:  5'- aUGCGCGAgGAAGUcguGCgCGUCGAuaugGCGg -3'
miRNA:   3'- aACGCGCU-CUUCGu--CGaGCAGCU----CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.