miRNA display CGI


Results 1 - 20 of 26 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26233 3' -62.2 NC_005342.2 + 25513 0.66 0.319628
Target:  5'- -----cGGCCGAGCGCguccuGGUaCGCGCc -3'
miRNA:   3'- uuggaaCCGGCUCGCG-----CCAcGCGCGa -5'
26233 3' -62.2 NC_005342.2 + 9340 0.66 0.311255
Target:  5'- uGGCCgu-GCCGAucagcgcgaagcgGCGCGG-GUGCGCg -3'
miRNA:   3'- -UUGGaacCGGCU-------------CGCGCCaCGCGCGa -5'
26233 3' -62.2 NC_005342.2 + 28211 0.66 0.304528
Target:  5'- uGCCUUGcgcguCCGGGCGCGucacggugaccGUGaCGCGCa -3'
miRNA:   3'- uUGGAACc----GGCUCGCGC-----------CAC-GCGCGa -5'
26233 3' -62.2 NC_005342.2 + 20741 0.66 0.297187
Target:  5'- uGCCggacaucGCCGA-CGCGGcUGCGCGCc -3'
miRNA:   3'- uUGGaac----CGGCUcGCGCC-ACGCGCGa -5'
26233 3' -62.2 NC_005342.2 + 5512 0.66 0.297187
Target:  5'- uGCCgUGGCCG-GCGaCGGcuugGCGCGa- -3'
miRNA:   3'- uUGGaACCGGCuCGC-GCCa---CGCGCga -5'
26233 3' -62.2 NC_005342.2 + 23581 0.66 0.297187
Target:  5'- aAGCCgccGCCGAGCaucauccaccaaGCGaUGCGCGCg -3'
miRNA:   3'- -UUGGaacCGGCUCG------------CGCcACGCGCGa -5'
26233 3' -62.2 NC_005342.2 + 9044 0.66 0.297187
Target:  5'- gAugCgcgGGCCGuGCuGcCGGUGCaGCGCg -3'
miRNA:   3'- -UugGaa-CCGGCuCG-C-GCCACG-CGCGa -5'
26233 3' -62.2 NC_005342.2 + 19025 0.66 0.289983
Target:  5'- gGGCaacGGCUGGaacgacgccauGCGCgGGUGCGCGCa -3'
miRNA:   3'- -UUGgaaCCGGCU-----------CGCG-CCACGCGCGa -5'
26233 3' -62.2 NC_005342.2 + 37779 0.67 0.256014
Target:  5'- uGCCgacGGCCGcauGCGC-GUGCGCGaCUg -3'
miRNA:   3'- uUGGaa-CCGGCu--CGCGcCACGCGC-GA- -5'
26233 3' -62.2 NC_005342.2 + 2597 0.67 0.249625
Target:  5'- cGACa--GGCCGAccGCGCGGUucauCGCGCUc -3'
miRNA:   3'- -UUGgaaCCGGCU--CGCGCCAc---GCGCGA- -5'
26233 3' -62.2 NC_005342.2 + 41322 0.67 0.249625
Target:  5'- cGCCU--GCuCGAGCGCGccgaGCGCGCUg -3'
miRNA:   3'- uUGGAacCG-GCUCGCGCca--CGCGCGA- -5'
26233 3' -62.2 NC_005342.2 + 10563 0.68 0.237241
Target:  5'- cGCCgggccGGCCGAcgaGCGGgucggGCGCGCg -3'
miRNA:   3'- uUGGaa---CCGGCUcg-CGCCa----CGCGCGa -5'
26233 3' -62.2 NC_005342.2 + 29674 0.68 0.219635
Target:  5'- aAGCgCgu-GCCGAGCGCGGc-CGCGCUg -3'
miRNA:   3'- -UUG-GaacCGGCUCGCGCCacGCGCGA- -5'
26233 3' -62.2 NC_005342.2 + 3172 0.68 0.214019
Target:  5'- -uUCUUGcCCGGGCGCGGccGCGCGgUg -3'
miRNA:   3'- uuGGAACcGGCUCGCGCCa-CGCGCgA- -5'
26233 3' -62.2 NC_005342.2 + 45904 0.68 0.214019
Target:  5'- cGACCagGGCUGGGCGCGucuCGCGCc -3'
miRNA:   3'- -UUGGaaCCGGCUCGCGCcacGCGCGa -5'
26233 3' -62.2 NC_005342.2 + 356 0.68 0.214019
Target:  5'- aGGCCgacagaguuGCCGAGCGCGuagaGCGCGCg -3'
miRNA:   3'- -UUGGaac------CGGCUCGCGCca--CGCGCGa -5'
26233 3' -62.2 NC_005342.2 + 14653 0.69 0.182862
Target:  5'- cAGCUUgucGGCCGAGUGCaGGUGUG-GCa -3'
miRNA:   3'- -UUGGAa--CCGGCUCGCG-CCACGCgCGa -5'
26233 3' -62.2 NC_005342.2 + 21665 0.7 0.168838
Target:  5'- cGGCUUUcGCauCGAcgGCGCGGUGCGCGCc -3'
miRNA:   3'- -UUGGAAcCG--GCU--CGCGCCACGCGCGa -5'
26233 3' -62.2 NC_005342.2 + 19345 0.7 0.168838
Target:  5'- cGGCCUgcGCCGAGCGCGaccGUGCG-GCa -3'
miRNA:   3'- -UUGGAacCGGCUCGCGC---CACGCgCGa -5'
26233 3' -62.2 NC_005342.2 + 35601 0.7 0.147596
Target:  5'- cGCCg-GGCgGGGCGCGG-GCGgGCg -3'
miRNA:   3'- uUGGaaCCGgCUCGCGCCaCGCgCGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.