miRNA display CGI


Results 1 - 20 of 21 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26233 5' -53.2 NC_005342.2 + 41388 0.66 0.818217
Target:  5'- uGGGcGG-CGCGCCGUGGcggcgaugcgggcuuUCGCGCGu- -3'
miRNA:   3'- gCUC-CUaGUGCGGCACU---------------AGCGUGUuc -5'
26233 5' -53.2 NC_005342.2 + 28519 0.66 0.814422
Target:  5'- gGAGGcgcuggCACGCgCGUGAaCGuCGCGGGu -3'
miRNA:   3'- gCUCCua----GUGCG-GCACUaGC-GUGUUC- -5'
26233 5' -53.2 NC_005342.2 + 6528 0.66 0.804797
Target:  5'- uCGuuGAUCGCGCCGUGc-CGCcCGAa -3'
miRNA:   3'- -GCucCUAGUGCGGCACuaGCGuGUUc -5'
26233 5' -53.2 NC_005342.2 + 16819 0.66 0.793001
Target:  5'- uGAGGAUCGCGaagcaaaaCGUcgccacgcggCGCGCAAGa -3'
miRNA:   3'- gCUCCUAGUGCg-------GCAcua-------GCGUGUUC- -5'
26233 5' -53.2 NC_005342.2 + 14894 0.67 0.754088
Target:  5'- aCGAcGG-CGCGCCGUucUCGCGCAAc -3'
miRNA:   3'- -GCUcCUaGUGCGGCAcuAGCGUGUUc -5'
26233 5' -53.2 NC_005342.2 + 41461 0.67 0.722019
Target:  5'- gCGGGcGAcucgCGCGCCGggcuaugGGUCuGCACGAGc -3'
miRNA:   3'- -GCUC-CUa---GUGCGGCa------CUAG-CGUGUUC- -5'
26233 5' -53.2 NC_005342.2 + 17314 0.67 0.722019
Target:  5'- cCGAGGAugaucugaUCGCGCUGUauagCGCACGc- -3'
miRNA:   3'- -GCUCCU--------AGUGCGGCAcua-GCGUGUuc -5'
26233 5' -53.2 NC_005342.2 + 46731 0.68 0.666875
Target:  5'- gGAGcacGUCAUGCCGuUGAUCGaagGCAAGa -3'
miRNA:   3'- gCUCc--UAGUGCGGC-ACUAGCg--UGUUC- -5'
26233 5' -53.2 NC_005342.2 + 18337 0.68 0.666875
Target:  5'- cCGAGGAcgcCGCGCgUGgcccGAUCGCGCAGc -3'
miRNA:   3'- -GCUCCUa--GUGCG-GCa---CUAGCGUGUUc -5'
26233 5' -53.2 NC_005342.2 + 25037 0.68 0.655698
Target:  5'- uCGGGuaguucGUCGCGCCGUaguuGAUCGCACu-- -3'
miRNA:   3'- -GCUCc-----UAGUGCGGCA----CUAGCGUGuuc -5'
26233 5' -53.2 NC_005342.2 + 20789 0.69 0.6445
Target:  5'- uCGGGGG-CACGCauggcUGAUCGCGCGc- -3'
miRNA:   3'- -GCUCCUaGUGCGgc---ACUAGCGUGUuc -5'
26233 5' -53.2 NC_005342.2 + 20576 0.7 0.555335
Target:  5'- --cGGGUCGCGCCGUGGU-GUuucuGCAGGc -3'
miRNA:   3'- gcuCCUAGUGCGGCACUAgCG----UGUUC- -5'
26233 5' -53.2 NC_005342.2 + 23247 0.71 0.533504
Target:  5'- aCGGGaaGAUCACGCUGUcGcgCGCGCGGa -3'
miRNA:   3'- -GCUC--CUAGUGCGGCA-CuaGCGUGUUc -5'
26233 5' -53.2 NC_005342.2 + 8202 0.71 0.533504
Target:  5'- -cAGGAUgACGCCGgcc-CGCGCGAGg -3'
miRNA:   3'- gcUCCUAgUGCGGCacuaGCGUGUUC- -5'
26233 5' -53.2 NC_005342.2 + 40558 0.71 0.530255
Target:  5'- aGAGGcgCGCGCCuucuggucgccggcGaUGGUCGCGCGAc -3'
miRNA:   3'- gCUCCuaGUGCGG--------------C-ACUAGCGUGUUc -5'
26233 5' -53.2 NC_005342.2 + 5496 0.71 0.480413
Target:  5'- gCGGGGAuauaggUCAUGCCGUGGccggcgacggcuUgGCGCGAGu -3'
miRNA:   3'- -GCUCCU------AGUGCGGCACU------------AgCGUGUUC- -5'
26233 5' -53.2 NC_005342.2 + 12097 0.71 0.480413
Target:  5'- aCGAGGcguugaagGUUGCGCCG--GUCGCGCAGGc -3'
miRNA:   3'- -GCUCC--------UAGUGCGGCacUAGCGUGUUC- -5'
26233 5' -53.2 NC_005342.2 + 20226 0.72 0.4599
Target:  5'- cCGAccaGAuUCGCGCCGcGAUCGCGCAAu -3'
miRNA:   3'- -GCUc--CU-AGUGCGGCaCUAGCGUGUUc -5'
26233 5' -53.2 NC_005342.2 + 41795 0.74 0.365018
Target:  5'- aCGAGGAUaGCGUCGUGcugCGCgACGAGg -3'
miRNA:   3'- -GCUCCUAgUGCGGCACua-GCG-UGUUC- -5'
26233 5' -53.2 NC_005342.2 + 8207 0.77 0.2247
Target:  5'- gCGAGGcGUcCGCGCCGUGGcgcCGCGCGAGu -3'
miRNA:   3'- -GCUCC-UA-GUGCGGCACUa--GCGUGUUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.