miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26234 3' -55.5 NC_005342.2 + 16986 0.66 0.717113
Target:  5'- aCUGACgAAcACCGAgacggcGCUGcGCcGCGCGg -3'
miRNA:   3'- -GGCUGgUUaUGGCU------UGAC-CGcCGCGC- -5'
26234 3' -55.5 NC_005342.2 + 14824 0.66 0.717113
Target:  5'- gCCGAUCAGaaugacGCCGGagaGCUGcuGCaGGCGCGu -3'
miRNA:   3'- -GGCUGGUUa-----UGGCU---UGAC--CG-CCGCGC- -5'
26234 3' -55.5 NC_005342.2 + 39726 0.66 0.717113
Target:  5'- -gGACUGAUcACgGAACUcGcGCGGCGCc -3'
miRNA:   3'- ggCUGGUUA-UGgCUUGA-C-CGCCGCGc -5'
26234 3' -55.5 NC_005342.2 + 19592 0.66 0.717113
Target:  5'- gCGAUCAAcgACgCGAACaaggucacGGCGaGCGCGg -3'
miRNA:   3'- gGCUGGUUa-UG-GCUUGa-------CCGC-CGCGC- -5'
26234 3' -55.5 NC_005342.2 + 4067 0.66 0.717113
Target:  5'- gCCG-CCcuUGCCGAGCg---GGCGCGa -3'
miRNA:   3'- -GGCuGGuuAUGGCUUGaccgCCGCGC- -5'
26234 3' -55.5 NC_005342.2 + 43956 0.66 0.717113
Target:  5'- cUCGAgUggUgGCCGGACUGGU-GCGCc -3'
miRNA:   3'- -GGCUgGuuA-UGGCUUGACCGcCGCGc -5'
26234 3' -55.5 NC_005342.2 + 24576 0.66 0.717113
Target:  5'- gUGACCGcccuguCCGGACUgacgGGCGGCaCGg -3'
miRNA:   3'- gGCUGGUuau---GGCUUGA----CCGCCGcGC- -5'
26234 3' -55.5 NC_005342.2 + 7385 0.66 0.717113
Target:  5'- gCGACCAucGCCGGcgACcagaaGGCGcGCGCc -3'
miRNA:   3'- gGCUGGUuaUGGCU--UGa----CCGC-CGCGc -5'
26234 3' -55.5 NC_005342.2 + 45704 0.66 0.712852
Target:  5'- cCCGGCCugccacucggcGCCGAggGCUGGCacggccugcgcuGGCGUa -3'
miRNA:   3'- -GGCUGGuua--------UGGCU--UGACCG------------CCGCGc -5'
26234 3' -55.5 NC_005342.2 + 27395 0.66 0.706437
Target:  5'- gCGACCcgacgcGCCG-ACgaucaGCGGCGCGg -3'
miRNA:   3'- gGCUGGuua---UGGCuUGac---CGCCGCGC- -5'
26234 3' -55.5 NC_005342.2 + 11935 0.66 0.706437
Target:  5'- cCCGGCgAcUACUcg---GGCGGCGCGu -3'
miRNA:   3'- -GGCUGgUuAUGGcuugaCCGCCGCGC- -5'
26234 3' -55.5 NC_005342.2 + 40035 0.66 0.706437
Target:  5'- gCGACUAcucguCCGAcgGCgacaGCGGCGCGa -3'
miRNA:   3'- gGCUGGUuau--GGCU--UGac--CGCCGCGC- -5'
26234 3' -55.5 NC_005342.2 + 15847 0.66 0.706437
Target:  5'- gCgGGCCGAcACCGAGaaccccgacGCGGCGCu -3'
miRNA:   3'- -GgCUGGUUaUGGCUUgac------CGCCGCGc -5'
26234 3' -55.5 NC_005342.2 + 17152 0.66 0.706437
Target:  5'- aCgGGCCAGgcGCCGAACcuGCaGGCGCu -3'
miRNA:   3'- -GgCUGGUUa-UGGCUUGacCG-CCGCGc -5'
26234 3' -55.5 NC_005342.2 + 23236 0.66 0.706437
Target:  5'- cUCGACCGAUGaCGGgaagaucacGCUGucGCGcGCGCGg -3'
miRNA:   3'- -GGCUGGUUAUgGCU---------UGAC--CGC-CGCGC- -5'
26234 3' -55.5 NC_005342.2 + 19178 0.66 0.706437
Target:  5'- gCG-CCAGgucgGCgCGAuCgugGGCGGCGCa -3'
miRNA:   3'- gGCuGGUUa---UG-GCUuGa--CCGCCGCGc -5'
26234 3' -55.5 NC_005342.2 + 19695 0.66 0.69569
Target:  5'- aCGAUUAugcugcucgcGUGCuCGGcGCUGGUGGCGUGc -3'
miRNA:   3'- gGCUGGU----------UAUG-GCU-UGACCGCCGCGC- -5'
26234 3' -55.5 NC_005342.2 + 15390 0.66 0.684882
Target:  5'- aUCGACCGAc-UCGAGCaGGCcGCGCu -3'
miRNA:   3'- -GGCUGGUUauGGCUUGaCCGcCGCGc -5'
26234 3' -55.5 NC_005342.2 + 25953 0.66 0.684882
Target:  5'- gCGGCCAGUACgCGGcGCUGGaaaGGC-Ca -3'
miRNA:   3'- gGCUGGUUAUG-GCU-UGACCg--CCGcGc -5'
26234 3' -55.5 NC_005342.2 + 13933 0.66 0.684882
Target:  5'- gCGACUucggGCCGGcgGCcGGUGcGCGCGa -3'
miRNA:   3'- gGCUGGuua-UGGCU--UGaCCGC-CGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.