miRNA display CGI


Results 1 - 20 of 59 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26234 5' -54.3 NC_005342.2 + 3735 0.66 0.789803
Target:  5'- uGCCGuacagcGUCGACguGgcguucugaucggccUUCGCGAUCugCGc -3'
miRNA:   3'- -CGGC------CAGCUGguC---------------AAGUGCUAGugGC- -5'
26234 5' -54.3 NC_005342.2 + 1951 0.66 0.785863
Target:  5'- aCCGGcgauaUCGuGCCAGUugucgguguaaUCGgGGUCGCCGu -3'
miRNA:   3'- cGGCC-----AGC-UGGUCA-----------AGUgCUAGUGGC- -5'
26234 5' -54.3 NC_005342.2 + 2669 0.66 0.785863
Target:  5'- gGCUGGUCGAgCGc--CAUGAgCGCCGa -3'
miRNA:   3'- -CGGCCAGCUgGUcaaGUGCUaGUGGC- -5'
26234 5' -54.3 NC_005342.2 + 31002 0.66 0.785863
Target:  5'- uGCCGGcgaGACCGGccgCACcugCGCCGa -3'
miRNA:   3'- -CGGCCag-CUGGUCaa-GUGcuaGUGGC- -5'
26234 5' -54.3 NC_005342.2 + 7830 0.66 0.785863
Target:  5'- cGCCGGcCauuuCCAGcUCGCGcUCGCCc -3'
miRNA:   3'- -CGGCCaGcu--GGUCaAGUGCuAGUGGc -5'
26234 5' -54.3 NC_005342.2 + 4815 0.66 0.785863
Target:  5'- aGUCGGcUGACC-GUaCGCGcgCGCCGu -3'
miRNA:   3'- -CGGCCaGCUGGuCAaGUGCuaGUGGC- -5'
26234 5' -54.3 NC_005342.2 + 27826 0.66 0.779906
Target:  5'- aGCCGG-CGugCAGaUCGCuuucagcacgucgcuGAgcuUCACCGg -3'
miRNA:   3'- -CGGCCaGCugGUCaAGUG---------------CU---AGUGGC- -5'
26234 5' -54.3 NC_005342.2 + 28456 0.66 0.775904
Target:  5'- cGCaGGUCGGCCAGcaacugCcCGAgCGCCGc -3'
miRNA:   3'- -CGgCCAGCUGGUCaa----GuGCUaGUGGC- -5'
26234 5' -54.3 NC_005342.2 + 3729 0.66 0.775904
Target:  5'- aUCGGUCGGcguCCAG-UCGgGAUUugCGg -3'
miRNA:   3'- cGGCCAGCU---GGUCaAGUgCUAGugGC- -5'
26234 5' -54.3 NC_005342.2 + 45364 0.66 0.764776
Target:  5'- cGCgCGGUCGGCCugucgcgcaauugGGcgaccUUCACGAcCGCCu -3'
miRNA:   3'- -CG-GCCAGCUGG-------------UC-----AAGUGCUaGUGGc -5'
26234 5' -54.3 NC_005342.2 + 23243 0.66 0.755548
Target:  5'- cGCCGGUCGugUuGUUCGUGAcCGuCCa -3'
miRNA:   3'- -CGGCCAGCugGuCAAGUGCUaGU-GGc -5'
26234 5' -54.3 NC_005342.2 + 13723 0.66 0.755548
Target:  5'- aGCaCGGUUGACgCGGUauugCGCGGUaACCa -3'
miRNA:   3'- -CG-GCCAGCUG-GUCAa---GUGCUAgUGGc -5'
26234 5' -54.3 NC_005342.2 + 19974 0.66 0.755548
Target:  5'- uGCCGuUCuAUCAGggCACGAUCGCa- -3'
miRNA:   3'- -CGGCcAGcUGGUCaaGUGCUAGUGgc -5'
26234 5' -54.3 NC_005342.2 + 30348 0.66 0.755548
Target:  5'- aCCGGgcgCGGCCGGcgucUUCACGAcgAUCGa -3'
miRNA:   3'- cGGCCa--GCUGGUC----AAGUGCUagUGGC- -5'
26234 5' -54.3 NC_005342.2 + 22968 0.66 0.755548
Target:  5'- cGCCGGcagCGuCgCGGUaC-CGGUCGCCGa -3'
miRNA:   3'- -CGGCCa--GCuG-GUCAaGuGCUAGUGGC- -5'
26234 5' -54.3 NC_005342.2 + 43700 0.66 0.746219
Target:  5'- aGCCGGgcacgauguucgugUCGACCGGgcgCACGAacgugcgcggcauccUCacGCCGa -3'
miRNA:   3'- -CGGCC--------------AGCUGGUCaa-GUGCU---------------AG--UGGC- -5'
26234 5' -54.3 NC_005342.2 + 14811 0.66 0.745176
Target:  5'- uGCCGGacucgCGGCUacGGUUCGgCGcgcaGUCGCCGc -3'
miRNA:   3'- -CGGCCa----GCUGG--UCAAGU-GC----UAGUGGC- -5'
26234 5' -54.3 NC_005342.2 + 6222 0.67 0.734689
Target:  5'- cGCUcGUUGGCCGcgcgcUUCACGcgCACCGa -3'
miRNA:   3'- -CGGcCAGCUGGUc----AAGUGCuaGUGGC- -5'
26234 5' -54.3 NC_005342.2 + 13882 0.67 0.724099
Target:  5'- uGCgCGG-CGGCCG--UCGCGAUCguaGCCGc -3'
miRNA:   3'- -CG-GCCaGCUGGUcaAGUGCUAG---UGGC- -5'
26234 5' -54.3 NC_005342.2 + 32445 0.67 0.713416
Target:  5'- aGCCGG-CGAgCAGaacgUCACGcgcagGUCGCUGc -3'
miRNA:   3'- -CGGCCaGCUgGUCa---AGUGC-----UAGUGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.