miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26235 3' -53 NC_005342.2 + 1295 0.66 0.810066
Target:  5'- cGCGcGCCGcCUugGCUGcGCGCGAUg -3'
miRNA:   3'- -CGCaCGGCaGAuaUGGCaCGCGUUGu -5'
26235 3' -53 NC_005342.2 + 9828 0.66 0.809097
Target:  5'- aGCGUcucgaucGCCGUCUugACCGUG-GcCGGCGu -3'
miRNA:   3'- -CGCA-------CGGCAGAuaUGGCACgC-GUUGU- -5'
26235 3' -53 NC_005342.2 + 8133 0.66 0.800291
Target:  5'- aGCGUGCCaUC-AUGCCGccuugGcCGCAugGa -3'
miRNA:   3'- -CGCACGGcAGaUAUGGCa----C-GCGUugU- -5'
26235 3' -53 NC_005342.2 + 36069 0.66 0.790331
Target:  5'- cGCGcGCCG-CUgcgcAUGCCGgGCcGCGACGa -3'
miRNA:   3'- -CGCaCGGCaGA----UAUGGCaCG-CGUUGU- -5'
26235 3' -53 NC_005342.2 + 47823 0.66 0.780197
Target:  5'- uCGUGCUGcUCgGUGCCGacgagGCGCAggcgGCAa -3'
miRNA:   3'- cGCACGGC-AGaUAUGGCa----CGCGU----UGU- -5'
26235 3' -53 NC_005342.2 + 35685 0.66 0.780197
Target:  5'- ---aGCCGUCgagcACCGUGCucGCGACc -3'
miRNA:   3'- cgcaCGGCAGaua-UGGCACG--CGUUGu -5'
26235 3' -53 NC_005342.2 + 44326 0.66 0.780197
Target:  5'- cCGUGCCG-CU--GCCGccGCGCgAGCAg -3'
miRNA:   3'- cGCACGGCaGAuaUGGCa-CGCG-UUGU- -5'
26235 3' -53 NC_005342.2 + 18365 0.67 0.763653
Target:  5'- gGCGUGUCGUUUAaccucgccggcaucaUGCuCGUgccguccgaaGCGCAACGc -3'
miRNA:   3'- -CGCACGGCAGAU---------------AUG-GCA----------CGCGUUGU- -5'
26235 3' -53 NC_005342.2 + 28399 0.67 0.759458
Target:  5'- uUGUGCCG-CgccgACCGUGCGacCGGCGc -3'
miRNA:   3'- cGCACGGCaGaua-UGGCACGC--GUUGU- -5'
26235 3' -53 NC_005342.2 + 37784 0.67 0.727353
Target:  5'- aCG-GCCG-C-AUGCgCGUGCGCGACu -3'
miRNA:   3'- cGCaCGGCaGaUAUG-GCACGCGUUGu -5'
26235 3' -53 NC_005342.2 + 25997 0.67 0.727353
Target:  5'- uGCGgGCCGUUUGUcguuUC-UGCGCAACGu -3'
miRNA:   3'- -CGCaCGGCAGAUAu---GGcACGCGUUGU- -5'
26235 3' -53 NC_005342.2 + 1408 0.68 0.704325
Target:  5'- uUGUGCCGUUcgAUGCCGagcacguucguguUGCGCAc-- -3'
miRNA:   3'- cGCACGGCAGa-UAUGGC-------------ACGCGUugu -5'
26235 3' -53 NC_005342.2 + 11353 0.68 0.694348
Target:  5'- cGCGUGCCGUCcaguaaaGCCaauugGCGCAGu- -3'
miRNA:   3'- -CGCACGGCAGaua----UGGca---CGCGUUgu -5'
26235 3' -53 NC_005342.2 + 1552 0.68 0.694348
Target:  5'- aGCGUGCCGUCgAUACCcaUGCuGUAu-- -3'
miRNA:   3'- -CGCACGGCAGaUAUGGc-ACG-CGUugu -5'
26235 3' -53 NC_005342.2 + 37142 0.68 0.683204
Target:  5'- gGCGUGCaCGU--GUACUGcgGCGUGACGa -3'
miRNA:   3'- -CGCACG-GCAgaUAUGGCa-CGCGUUGU- -5'
26235 3' -53 NC_005342.2 + 1093 0.68 0.683204
Target:  5'- cGCGcGCgaaGUCgGUGCCGUgcugcGCGCGACGu -3'
miRNA:   3'- -CGCaCGg--CAGaUAUGGCA-----CGCGUUGU- -5'
26235 3' -53 NC_005342.2 + 19301 0.68 0.660774
Target:  5'- cGCGUGCC-UCggcgcGCCGcUGCGCAccgACGg -3'
miRNA:   3'- -CGCACGGcAGaua--UGGC-ACGCGU---UGU- -5'
26235 3' -53 NC_005342.2 + 38093 0.68 0.660774
Target:  5'- cGCGUGUCGggUGcGCCG-GCGUGACGc -3'
miRNA:   3'- -CGCACGGCagAUaUGGCaCGCGUUGU- -5'
26235 3' -53 NC_005342.2 + 8747 0.68 0.660774
Target:  5'- gGCGUGUCGUCcGUuacGCCGcGCGCuucCAu -3'
miRNA:   3'- -CGCACGGCAGaUA---UGGCaCGCGuu-GU- -5'
26235 3' -53 NC_005342.2 + 29726 0.69 0.652893
Target:  5'- aGCGUGCCGUCggcgucguagauuuCCG-GCGCGuauuGCGa -3'
miRNA:   3'- -CGCACGGCAGauau----------GGCaCGCGU----UGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.