miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26235 5' -54.8 NC_005342.2 + 46575 0.66 0.701853
Target:  5'- gUCGGCAagCGGuAUGaGUACAAGCgcgGCUu -3'
miRNA:   3'- gAGCCGUa-GCU-UGC-CGUGUUCGa--CGA- -5'
26235 5' -54.8 NC_005342.2 + 11048 0.66 0.697433
Target:  5'- aCUCGGCAccggcgcgcgucgUGAGCGGCGugucgcCGcGCUGCg -3'
miRNA:   3'- -GAGCCGUa------------GCUUGCCGU------GUuCGACGa -5'
26235 5' -54.8 NC_005342.2 + 19354 0.66 0.690783
Target:  5'- -cCGaGCG-CGAccguGCGGCACGAGC-GCUc -3'
miRNA:   3'- gaGC-CGUaGCU----UGCCGUGUUCGaCGA- -5'
26235 5' -54.8 NC_005342.2 + 42350 0.66 0.690783
Target:  5'- -aCGGCAUgGuGCGcGUugccuGCAAGCUGCc -3'
miRNA:   3'- gaGCCGUAgCuUGC-CG-----UGUUCGACGa -5'
26235 5' -54.8 NC_005342.2 + 19714 0.66 0.679653
Target:  5'- gCUCGGCGcUGGuggcgugcaagACGGCGCc-GCUGCc -3'
miRNA:   3'- -GAGCCGUaGCU-----------UGCCGUGuuCGACGa -5'
26235 5' -54.8 NC_005342.2 + 47720 0.66 0.679653
Target:  5'- gUCGGCGUCaucGGCGGUguGC-GGCUGUg -3'
miRNA:   3'- gAGCCGUAGc--UUGCCG--UGuUCGACGa -5'
26235 5' -54.8 NC_005342.2 + 30354 0.66 0.679653
Target:  5'- -gCGGCAagGcGCGGCGUgcGCUGCUc -3'
miRNA:   3'- gaGCCGUagCuUGCCGUGuuCGACGA- -5'
26235 5' -54.8 NC_005342.2 + 11936 0.66 0.679653
Target:  5'- -cCGGCGacuacUCGGGCGGCGCGuaucGCaugGCg -3'
miRNA:   3'- gaGCCGU-----AGCUUGCCGUGUu---CGa--CGa -5'
26235 5' -54.8 NC_005342.2 + 3278 0.66 0.679653
Target:  5'- gUCGGCcgCcGACGuGCGCGcgcaggauAGCUGCc -3'
miRNA:   3'- gAGCCGuaGcUUGC-CGUGU--------UCGACGa -5'
26235 5' -54.8 NC_005342.2 + 23098 0.66 0.678538
Target:  5'- aUCGGUugcGUCGGcugaacaGCGGCGCuaauGUUGCg -3'
miRNA:   3'- gAGCCG---UAGCU-------UGCCGUGuu--CGACGa -5'
26235 5' -54.8 NC_005342.2 + 28485 0.66 0.676305
Target:  5'- ---cGCGUCGAccgcgcgggucgcgGCGGCGCG-GCUGCc -3'
miRNA:   3'- gagcCGUAGCU--------------UGCCGUGUuCGACGa -5'
26235 5' -54.8 NC_005342.2 + 20717 0.66 0.668477
Target:  5'- --aGGCGUCGGcgcaGGCAgAcGCUGCg -3'
miRNA:   3'- gagCCGUAGCUug--CCGUgUuCGACGa -5'
26235 5' -54.8 NC_005342.2 + 33283 0.66 0.665116
Target:  5'- gCUUGGCGcacUCGugccacaccugcacuCGGCcgACAAGCUGCg -3'
miRNA:   3'- -GAGCCGU---AGCuu-------------GCCG--UGUUCGACGa -5'
26235 5' -54.8 NC_005342.2 + 34453 0.66 0.665116
Target:  5'- -gCGGCAacgccgcgagcacgUCGGACGGCgACcAGCUGa- -3'
miRNA:   3'- gaGCCGU--------------AGCUUGCCG-UGuUCGACga -5'
26235 5' -54.8 NC_005342.2 + 17567 0.66 0.661753
Target:  5'- -gCGGCGgcgCGAACGGCuucaugaaggugcuCGAGCaGCg -3'
miRNA:   3'- gaGCCGUa--GCUUGCCGu-------------GUUCGaCGa -5'
26235 5' -54.8 NC_005342.2 + 21420 0.66 0.657264
Target:  5'- aUgGGCAaaUUGGGCGGCGCAGGaC-GCg -3'
miRNA:   3'- gAgCCGU--AGCUUGCCGUGUUC-GaCGa -5'
26235 5' -54.8 NC_005342.2 + 45143 0.66 0.657264
Target:  5'- uUCGGCggCGccGACGGCGCAuucGCgaGCa -3'
miRNA:   3'- gAGCCGuaGC--UUGCCGUGUu--CGa-CGa -5'
26235 5' -54.8 NC_005342.2 + 12088 0.66 0.657264
Target:  5'- gUCGaacuuacCGAGCGGCACGAGCUcGCc -3'
miRNA:   3'- gAGCcgua---GCUUGCCGUGUUCGA-CGa -5'
26235 5' -54.8 NC_005342.2 + 30880 0.66 0.656141
Target:  5'- cCUUGGCGUCGccgcccaAACGGCGCGccgUGCUc -3'
miRNA:   3'- -GAGCCGUAGC-------UUGCCGUGUucgACGA- -5'
26235 5' -54.8 NC_005342.2 + 18487 0.66 0.646027
Target:  5'- -aCGGCAUCcaacgccaGAGCGGCgugcagaacuacGCGAGCggGCa -3'
miRNA:   3'- gaGCCGUAG--------CUUGCCG------------UGUUCGa-CGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.