miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26236 5' -51 NC_005342.2 + 21777 0.66 0.878443
Target:  5'- aUUCGGcgaagugCCGCGCGAGUGgCAgcUGAAAGc -3'
miRNA:   3'- cAAGCUa------GGCGCGCUCGU-GU--ACUUUU- -5'
26236 5' -51 NC_005342.2 + 21108 0.66 0.878443
Target:  5'- -gUCGGUCUGauguuCGCGAGCGCccUGAAc- -3'
miRNA:   3'- caAGCUAGGC-----GCGCUCGUGu-ACUUuu -5'
26236 5' -51 NC_005342.2 + 13951 0.66 0.87021
Target:  5'- --cCGGUgCGCGCGAGCugAg----- -3'
miRNA:   3'- caaGCUAgGCGCGCUCGugUacuuuu -5'
26236 5' -51 NC_005342.2 + 23766 0.66 0.861701
Target:  5'- -gUCGuUCUGCGCGAacgGCACGaGGAAu -3'
miRNA:   3'- caAGCuAGGCGCGCU---CGUGUaCUUUu -5'
26236 5' -51 NC_005342.2 + 8223 0.66 0.861701
Target:  5'- -gUgGcgCCGCGCGAGUucCGUGAu-- -3'
miRNA:   3'- caAgCuaGGCGCGCUCGu-GUACUuuu -5'
26236 5' -51 NC_005342.2 + 37116 0.66 0.843892
Target:  5'- cGUUCuucCCGCGCGgcgucaAGCGCGUGAc-- -3'
miRNA:   3'- -CAAGcuaGGCGCGC------UCGUGUACUuuu -5'
26236 5' -51 NC_005342.2 + 26313 0.66 0.843892
Target:  5'- --cCGAUCUGCGCGcGCAgCAUGc--- -3'
miRNA:   3'- caaGCUAGGCGCGCuCGU-GUACuuuu -5'
26236 5' -51 NC_005342.2 + 13629 0.67 0.83461
Target:  5'- -cUCGGgcagCUGCGCGAGCAgCAcGAGc- -3'
miRNA:   3'- caAGCUa---GGCGCGCUCGU-GUaCUUuu -5'
26236 5' -51 NC_005342.2 + 6994 0.67 0.825092
Target:  5'- -gUCGAUCUGCGgGAaGCGCAg----- -3'
miRNA:   3'- caAGCUAGGCGCgCU-CGUGUacuuuu -5'
26236 5' -51 NC_005342.2 + 4941 0.68 0.784873
Target:  5'- -cUCGAUCgGCaCGAGCGCAUa---- -3'
miRNA:   3'- caAGCUAGgCGcGCUCGUGUAcuuuu -5'
26236 5' -51 NC_005342.2 + 9802 0.68 0.774344
Target:  5'- --cCG-UCCGCGUcgccuGAGCGCAUGAc-- -3'
miRNA:   3'- caaGCuAGGCGCG-----CUCGUGUACUuuu -5'
26236 5' -51 NC_005342.2 + 28048 0.68 0.741828
Target:  5'- --gUGAUCgGCGUGAGCACGUc---- -3'
miRNA:   3'- caaGCUAGgCGCGCUCGUGUAcuuuu -5'
26236 5' -51 NC_005342.2 + 13813 0.69 0.7082
Target:  5'- gGUUCGGcgacgggcgCCGCGuCGAGCGCAuUGAGc- -3'
miRNA:   3'- -CAAGCUa--------GGCGC-GCUCGUGU-ACUUuu -5'
26236 5' -51 NC_005342.2 + 9043 0.69 0.696807
Target:  5'- --cCGAUCUGCGUGAGCGCc------ -3'
miRNA:   3'- caaGCUAGGCGCGCUCGUGuacuuuu -5'
26236 5' -51 NC_005342.2 + 121 0.7 0.650664
Target:  5'- -gUCGugauUCgGCGCGAGCACAcGAu-- -3'
miRNA:   3'- caAGCu---AGgCGCGCUCGUGUaCUuuu -5'
26236 5' -51 NC_005342.2 + 19562 0.7 0.639049
Target:  5'- --aCGGUCgGCGCG-GCACAaGggGAa -3'
miRNA:   3'- caaGCUAGgCGCGCuCGUGUaCuuUU- -5'
26236 5' -51 NC_005342.2 + 24804 0.7 0.627428
Target:  5'- cGUUCGGUagCUGCGCGAccuGCACGuUGAAGu -3'
miRNA:   3'- -CAAGCUA--GGCGCGCU---CGUGU-ACUUUu -5'
26236 5' -51 NC_005342.2 + 18180 0.7 0.627428
Target:  5'- -aUCGAUCCGCGCuuuGGCACGgucGAc-- -3'
miRNA:   3'- caAGCUAGGCGCGc--UCGUGUa--CUuuu -5'
26236 5' -51 NC_005342.2 + 24698 0.72 0.524308
Target:  5'- --cCGAUCCGCGCGcGCgacaGCGUGAu-- -3'
miRNA:   3'- caaGCUAGGCGCGCuCG----UGUACUuuu -5'
26236 5' -51 NC_005342.2 + 10765 0.73 0.491252
Target:  5'- -cUCGAUCUGCaugcguuugGCGAGCGCcgGAAu- -3'
miRNA:   3'- caAGCUAGGCG---------CGCUCGUGuaCUUuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.