Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2624 | 3' | -65.3 | NC_001491.2 | + | 148443 | 0.67 | 0.445102 |
Target: 5'- aCGCCCgCGgccGCUCUGCCCCg-CGUUCc -3' miRNA: 3'- -GCGGGgGUa--UGGGGCGGGGgaGCGAG- -5' |
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2624 | 3' | -65.3 | NC_001491.2 | + | 147475 | 1.08 | 0.000524 |
Target: 5'- aCGCCCCCAUACCCCGCCCCCUCGCUCc -3' miRNA: 3'- -GCGGGGGUAUGGGGCGGGGGAGCGAG- -5' |
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2624 | 3' | -65.3 | NC_001491.2 | + | 122095 | 0.69 | 0.342221 |
Target: 5'- uGCCCCCAaaccauCCCCGagcuuUCCUCUCGCcuUCa -3' miRNA: 3'- gCGGGGGUau----GGGGC-----GGGGGAGCG--AG- -5' |
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2624 | 3' | -65.3 | NC_001491.2 | + | 121323 | 0.67 | 0.453715 |
Target: 5'- uGCCCCgAUAUCgaGCaCCUgcgCUCGCUCa -3' miRNA: 3'- gCGGGGgUAUGGggCG-GGG---GAGCGAG- -5' |
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2624 | 3' | -65.3 | NC_001491.2 | + | 118938 | 0.75 | 0.12689 |
Target: 5'- aCGCUgCCu--CCCCGCCCgUCUCGCUCc -3' miRNA: 3'- -GCGGgGGuauGGGGCGGG-GGAGCGAG- -5' |
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2624 | 3' | -65.3 | NC_001491.2 | + | 118283 | 0.7 | 0.269447 |
Target: 5'- cCGCaCCCAaACgCCGCCCUCcCGCUCc -3' miRNA: 3'- -GCGgGGGUaUGgGGCGGGGGaGCGAG- -5' |
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2624 | 3' | -65.3 | NC_001491.2 | + | 108573 | 0.71 | 0.240722 |
Target: 5'- -uCCCCCAUGCCUCGUCCCa--GCUa -3' miRNA: 3'- gcGGGGGUAUGGGGCGGGGgagCGAg -5' |
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2624 | 3' | -65.3 | NC_001491.2 | + | 100566 | 0.71 | 0.263489 |
Target: 5'- cCGCCCCCAUcCgCCgGCCUgCcCGCUCc -3' miRNA: 3'- -GCGGGGGUAuG-GGgCGGGgGaGCGAG- -5' |
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2624 | 3' | -65.3 | NC_001491.2 | + | 91205 | 0.66 | 0.498067 |
Target: 5'- -aCCCaCgCAUGCCCCgaagucaaacGCUCCCUCGC-Cg -3' miRNA: 3'- gcGGG-G-GUAUGGGG----------CGGGGGAGCGaG- -5' |
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2624 | 3' | -65.3 | NC_001491.2 | + | 86786 | 0.71 | 0.240722 |
Target: 5'- aCGuCCCCCAggACCCuCGCUgCaaCUCGCUCg -3' miRNA: 3'- -GC-GGGGGUa-UGGG-GCGGgG--GAGCGAG- -5' |
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2624 | 3' | -65.3 | NC_001491.2 | + | 76238 | 0.74 | 0.15373 |
Target: 5'- uCGCUCCCGccgcGCCgCCGCCgcagcagCCCUCGCUCc -3' miRNA: 3'- -GCGGGGGUa---UGG-GGCGG-------GGGAGCGAG- -5' |
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2624 | 3' | -65.3 | NC_001491.2 | + | 76174 | 0.74 | 0.15373 |
Target: 5'- uCGCUCCCGccgcGCCgCCGCCgcagcagCCCUCGCUCc -3' miRNA: 3'- -GCGGGGGUa---UGG-GGCGG-------GGGAGCGAG- -5' |
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2624 | 3' | -65.3 | NC_001491.2 | + | 76110 | 0.74 | 0.15373 |
Target: 5'- uCGCUCCCGccgcGCCgCCGCCgcagcagCCCUCGCUCc -3' miRNA: 3'- -GCGGGGGUa---UGG-GGCGG-------GGGAGCGAG- -5' |
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2624 | 3' | -65.3 | NC_001491.2 | + | 76046 | 0.74 | 0.15373 |
Target: 5'- uCGCUCCCGccgcGCCgCCGCCgcagcagCCCUCGCUCc -3' miRNA: 3'- -GCGGGGGUa---UGG-GGCGG-------GGGAGCGAG- -5' |
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2624 | 3' | -65.3 | NC_001491.2 | + | 75982 | 0.74 | 0.15373 |
Target: 5'- uCGCUCCCGccgcGCCgCCGCCgcagcagCCCUCGCUCc -3' miRNA: 3'- -GCGGGGGUa---UGG-GGCGG-------GGGAGCGAG- -5' |
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2624 | 3' | -65.3 | NC_001491.2 | + | 51305 | 0.66 | 0.462418 |
Target: 5'- uCGCCUUCGcgGCUCUGCCggCCC-CGCUCu -3' miRNA: 3'- -GCGGGGGUa-UGGGGCGG--GGGaGCGAG- -5' |
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2624 | 3' | -65.3 | NC_001491.2 | + | 46070 | 0.66 | 0.489035 |
Target: 5'- aCGCCuCCCGgACCCU--CCCCUCGUcCa -3' miRNA: 3'- -GCGG-GGGUaUGGGGcgGGGGAGCGaG- -5' |
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2624 | 3' | -65.3 | NC_001491.2 | + | 40829 | 0.68 | 0.39544 |
Target: 5'- aGCCCCCcuuggACgaCUGCCCCC-CGCg- -3' miRNA: 3'- gCGGGGGua---UGg-GGCGGGGGaGCGag -5' |
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2624 | 3' | -65.3 | NC_001491.2 | + | 40562 | 0.68 | 0.39544 |
Target: 5'- uGCCCCauuCAUGCUaCGCCCCCUCcCa- -3' miRNA: 3'- gCGGGG---GUAUGGgGCGGGGGAGcGag -5' |
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2624 | 3' | -65.3 | NC_001491.2 | + | 36158 | 0.74 | 0.157473 |
Target: 5'- cCGCCUCCAUccgcugacgcugaACCCCGCCccgCCCUCuGCUg -3' miRNA: 3'- -GCGGGGGUA-------------UGGGGCGG---GGGAG-CGAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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