miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2624 3' -65.3 NC_001491.2 + 118283 0.7 0.269447
Target:  5'- cCGCaCCCAaACgCCGCCCUCcCGCUCc -3'
miRNA:   3'- -GCGgGGGUaUGgGGCGGGGGaGCGAG- -5'
2624 3' -65.3 NC_001491.2 + 100566 0.71 0.263489
Target:  5'- cCGCCCCCAUcCgCCgGCCUgCcCGCUCc -3'
miRNA:   3'- -GCGGGGGUAuG-GGgCGGGgGaGCGAG- -5'
2624 3' -65.3 NC_001491.2 + 7298 0.71 0.257638
Target:  5'- -cCCCCCAUGCCCCGCCCa--CGgUUu -3'
miRNA:   3'- gcGGGGGUAUGGGGCGGGggaGCgAG- -5'
2624 3' -65.3 NC_001491.2 + 86786 0.71 0.240722
Target:  5'- aCGuCCCCCAggACCCuCGCUgCaaCUCGCUCg -3'
miRNA:   3'- -GC-GGGGGUa-UGGG-GCGGgG--GAGCGAG- -5'
2624 3' -65.3 NC_001491.2 + 108573 0.71 0.240722
Target:  5'- -uCCCCCAUGCCUCGUCCCa--GCUa -3'
miRNA:   3'- gcGGGGGUAUGGGGCGGGGgagCGAg -5'
2624 3' -65.3 NC_001491.2 + 36158 0.74 0.157473
Target:  5'- cCGCCUCCAUccgcugacgcugaACCCCGCCccgCCCUCuGCUg -3'
miRNA:   3'- -GCGGGGGUA-------------UGGGGCGG---GGGAG-CGAg -5'
2624 3' -65.3 NC_001491.2 + 75982 0.74 0.15373
Target:  5'- uCGCUCCCGccgcGCCgCCGCCgcagcagCCCUCGCUCc -3'
miRNA:   3'- -GCGGGGGUa---UGG-GGCGG-------GGGAGCGAG- -5'
2624 3' -65.3 NC_001491.2 + 76046 0.74 0.15373
Target:  5'- uCGCUCCCGccgcGCCgCCGCCgcagcagCCCUCGCUCc -3'
miRNA:   3'- -GCGGGGGUa---UGG-GGCGG-------GGGAGCGAG- -5'
2624 3' -65.3 NC_001491.2 + 76110 0.74 0.15373
Target:  5'- uCGCUCCCGccgcGCCgCCGCCgcagcagCCCUCGCUCc -3'
miRNA:   3'- -GCGGGGGUa---UGG-GGCGG-------GGGAGCGAG- -5'
2624 3' -65.3 NC_001491.2 + 76174 0.74 0.15373
Target:  5'- uCGCUCCCGccgcGCCgCCGCCgcagcagCCCUCGCUCc -3'
miRNA:   3'- -GCGGGGGUa---UGG-GGCGG-------GGGAGCGAG- -5'
2624 3' -65.3 NC_001491.2 + 76238 0.74 0.15373
Target:  5'- uCGCUCCCGccgcGCCgCCGCCgcagcagCCCUCGCUCc -3'
miRNA:   3'- -GCGGGGGUa---UGG-GGCGG-------GGGAGCGAG- -5'
2624 3' -65.3 NC_001491.2 + 118938 0.75 0.12689
Target:  5'- aCGCUgCCu--CCCCGCCCgUCUCGCUCc -3'
miRNA:   3'- -GCGGgGGuauGGGGCGGG-GGAGCGAG- -5'
2624 3' -65.3 NC_001491.2 + 8524 0.77 0.091997
Target:  5'- uCGCCCCCGgcgggggaCCCGUCCCCaCGCUCc -3'
miRNA:   3'- -GCGGGGGUaug-----GGGCGGGGGaGCGAG- -5'
2624 3' -65.3 NC_001491.2 + 27249 0.8 0.05553
Target:  5'- cCGCCCCCGU-CCCCGUCCCC--GCUCc -3'
miRNA:   3'- -GCGGGGGUAuGGGGCGGGGGagCGAG- -5'
2624 3' -65.3 NC_001491.2 + 147475 1.08 0.000524
Target:  5'- aCGCCCCCAUACCCCGCCCCCUCGCUCc -3'
miRNA:   3'- -GCGGGGGUAUGGGGCGGGGGAGCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.