miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26247 5' -51.3 NC_005344.1 + 37453 0.66 0.791044
Target:  5'- -cGCGUuagCAUCAGCAagcuccuuuguguAUCUGGCGuCa -3'
miRNA:   3'- uaCGCAa--GUAGUCGU-------------UAGGCCGUuGc -5'
26247 5' -51.3 NC_005344.1 + 7591 0.68 0.715185
Target:  5'- -gGCGUUUugCAGUAAgucCCGGCGAUGc -3'
miRNA:   3'- uaCGCAAGuaGUCGUUa--GGCCGUUGC- -5'
26247 5' -51.3 NC_005344.1 + 1280 0.68 0.715185
Target:  5'- uUGaUGUcCAUCAGCAGaccUUCGGCAAUGc -3'
miRNA:   3'- uAC-GCAaGUAGUCGUU---AGGCCGUUGC- -5'
26247 5' -51.3 NC_005344.1 + 34428 0.71 0.483583
Target:  5'- uUGCGUUCAUCaaaucggaguugaGGCGccgcagcaguuGUCCGGUAAUGc -3'
miRNA:   3'- uACGCAAGUAG-------------UCGU-----------UAGGCCGUUGC- -5'
26247 5' -51.3 NC_005344.1 + 7567 1.08 0.001633
Target:  5'- uAUGCGUUCAUCAGCAAUCCGGCAACGg -3'
miRNA:   3'- -UACGCAAGUAGUCGUUAGGCCGUUGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.