miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26249 5' -47.6 NC_005344.1 + 1190 0.66 0.956573
Target:  5'- -gGGUCAUG--UGCAGAaacaACAGCGCCu -3'
miRNA:   3'- cgUUAGUACcgACGUUU----UGUUGCGGu -5'
26249 5' -47.6 NC_005344.1 + 33220 0.66 0.953832
Target:  5'- cGCuuUCAUGGUgagccugcuguccgGCGAgaacGACAugGCCc -3'
miRNA:   3'- -CGuuAGUACCGa-------------CGUU----UUGUugCGGu -5'
26249 5' -47.6 NC_005344.1 + 10245 0.66 0.941711
Target:  5'- gGUAAUCAUGGCUacuugGCAAGGaucaaAugGCgGa -3'
miRNA:   3'- -CGUUAGUACCGA-----CGUUUUg----UugCGgU- -5'
26249 5' -47.6 NC_005344.1 + 37354 0.67 0.936103
Target:  5'- gGCAA-CAUGauGUaGCAGAACuuGACGCCAg -3'
miRNA:   3'- -CGUUaGUAC--CGaCGUUUUG--UUGCGGU- -5'
26249 5' -47.6 NC_005344.1 + 13959 0.67 0.936103
Target:  5'- aGCAAggccauUCAUGGCUGUAu-AUGAUGCg- -3'
miRNA:   3'- -CGUU------AGUACCGACGUuuUGUUGCGgu -5'
26249 5' -47.6 NC_005344.1 + 13261 0.67 0.930164
Target:  5'- cGCAG-CA-GGCUGCAAaagcggcaguAACAACaCCAa -3'
miRNA:   3'- -CGUUaGUaCCGACGUU----------UUGUUGcGGU- -5'
26249 5' -47.6 NC_005344.1 + 35055 0.67 0.930164
Target:  5'- uCAAUCAcUGGCUGCuuAAUGGCGgUg -3'
miRNA:   3'- cGUUAGU-ACCGACGuuUUGUUGCgGu -5'
26249 5' -47.6 NC_005344.1 + 9908 0.68 0.903084
Target:  5'- aGCAAUCAacUGGCUaCGAuc--GCGCCGa -3'
miRNA:   3'- -CGUUAGU--ACCGAcGUUuuguUGCGGU- -5'
26249 5' -47.6 NC_005344.1 + 37763 0.68 0.895493
Target:  5'- cGCAGUaaggGGCUGCGuugAGAUAAgaGCCAg -3'
miRNA:   3'- -CGUUAgua-CCGACGU---UUUGUUg-CGGU- -5'
26249 5' -47.6 NC_005344.1 + 31869 0.68 0.875978
Target:  5'- -aGAUCG-GGCUGCAuGACuaucaaaucaaauACGCCAg -3'
miRNA:   3'- cgUUAGUaCCGACGUuUUGu------------UGCGGU- -5'
26249 5' -47.6 NC_005344.1 + 7551 0.69 0.856552
Target:  5'- uCAGUgAUGGCUGUgcgacauacAAAGCAgcaccagcggugguuGCGCCAg -3'
miRNA:   3'- cGUUAgUACCGACG---------UUUUGU---------------UGCGGU- -5'
26249 5' -47.6 NC_005344.1 + 3119 0.7 0.781897
Target:  5'- gGCAGUCA-GGCcaUGCAGca-GAUGCCAa -3'
miRNA:   3'- -CGUUAGUaCCG--ACGUUuugUUGCGGU- -5'
26249 5' -47.6 NC_005344.1 + 10664 1.12 0.002134
Target:  5'- uGCAAUCAUGGCUGCAAAACAACGCCAa -3'
miRNA:   3'- -CGUUAGUACCGACGUUUUGUUGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.