Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26254 | 3' | -56.3 | NC_005345.2 | + | 35204 | 0.66 | 0.59122 |
Target: 5'- aGGGGCGccccguuGCUGUUCaGGcGGCCguggGCGg -3' miRNA: 3'- -UUCCGUu------CGACAAGgCCuUCGGa---CGC- -5' |
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26254 | 3' | -56.3 | NC_005345.2 | + | 35705 | 0.66 | 0.590101 |
Target: 5'- uGGGCAAGCUG--CCGGAcGCgccgaaaCUGCu -3' miRNA: 3'- uUCCGUUCGACaaGGCCUuCG-------GACGc -5' |
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26254 | 3' | -56.3 | NC_005345.2 | + | 33512 | 0.66 | 0.580049 |
Target: 5'- -cGGCGAGCag-UCCGGGcaggcggcgAGCC-GCGg -3' miRNA: 3'- uuCCGUUCGacaAGGCCU---------UCGGaCGC- -5' |
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26254 | 3' | -56.3 | NC_005345.2 | + | 36217 | 0.66 | 0.54684 |
Target: 5'- -uGGUggGCcagUCCGcGAGCCUGCu -3' miRNA: 3'- uuCCGuuCGacaAGGCcUUCGGACGc -5' |
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26254 | 3' | -56.3 | NC_005345.2 | + | 2020 | 0.66 | 0.5359 |
Target: 5'- --cGCuccGCUGcUCCGGGgccGGCCUGCa -3' miRNA: 3'- uucCGuu-CGACaAGGCCU---UCGGACGc -5' |
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26254 | 3' | -56.3 | NC_005345.2 | + | 46073 | 0.67 | 0.525037 |
Target: 5'- cAGGC-GGCcgGggCCGccGggGCCUGCGc -3' miRNA: 3'- uUCCGuUCGa-CaaGGC--CuuCGGACGC- -5' |
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26254 | 3' | -56.3 | NC_005345.2 | + | 10799 | 0.67 | 0.514259 |
Target: 5'- -cGGCAGGC-GgaCCGGcucgauugguGCCUGCGg -3' miRNA: 3'- uuCCGUUCGaCaaGGCCuu--------CGGACGC- -5' |
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26254 | 3' | -56.3 | NC_005345.2 | + | 5730 | 0.67 | 0.503572 |
Target: 5'- cAGGCcGGCcgUGUUCCGGGccgcAGCCgaggacUGCGc -3' miRNA: 3'- uUCCGuUCG--ACAAGGCCU----UCGG------ACGC- -5' |
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26254 | 3' | -56.3 | NC_005345.2 | + | 41471 | 0.68 | 0.461856 |
Target: 5'- -cGGCGGGCUGcgCUGGggGCUccccuucacaGCGg -3' miRNA: 3'- uuCCGUUCGACaaGGCCuuCGGa---------CGC- -5' |
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26254 | 3' | -56.3 | NC_005345.2 | + | 689 | 0.68 | 0.431797 |
Target: 5'- cGGcGCAGGCU--UCCGGAacAGCUUGCc -3' miRNA: 3'- uUC-CGUUCGAcaAGGCCU--UCGGACGc -5' |
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26254 | 3' | -56.3 | NC_005345.2 | + | 13432 | 0.7 | 0.357587 |
Target: 5'- cGGGCGAGCaGUuucggcgcgUCCGGcAGCUUGCc -3' miRNA: 3'- uUCCGUUCGaCA---------AGGCCuUCGGACGc -5' |
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26254 | 3' | -56.3 | NC_005345.2 | + | 6646 | 0.7 | 0.323984 |
Target: 5'- -cGGCGucaccgagcAGCUGacCCGGAAGCCUuGCc -3' miRNA: 3'- uuCCGU---------UCGACaaGGCCUUCGGA-CGc -5' |
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26254 | 3' | -56.3 | NC_005345.2 | + | 20507 | 0.72 | 0.263992 |
Target: 5'- cGGGGCuuuccGCUGccCCGGGaucGGCCUGCGg -3' miRNA: 3'- -UUCCGuu---CGACaaGGCCU---UCGGACGC- -5' |
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26254 | 3' | -56.3 | NC_005345.2 | + | 45570 | 0.73 | 0.207625 |
Target: 5'- cGGGGCGGGCcgGUUgcggCCGGggGCC-GCGa -3' miRNA: 3'- -UUCCGUUCGa-CAA----GGCCuuCGGaCGC- -5' |
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26254 | 3' | -56.3 | NC_005345.2 | + | 48455 | 1.06 | 0.000887 |
Target: 5'- gAAGGCAAGCUGUUCCGGAAGCCUGCGc -3' miRNA: 3'- -UUCCGUUCGACAAGGCCUUCGGACGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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