miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26256 5' -49.1 NC_005345.2 + 36365 0.66 0.957961
Target:  5'- -gGCGGGUCguuGCGG--GUGG--UCCa -3'
miRNA:   3'- agCGCCCAGau-UGCUuuUACCugAGG- -5'
26256 5' -49.1 NC_005345.2 + 44826 0.66 0.953667
Target:  5'- cUCGCGGGUggGGCGcaucGAcgGGugcuugauCUCCg -3'
miRNA:   3'- -AGCGCCCAgaUUGCu---UUuaCCu-------GAGG- -5'
26256 5' -49.1 NC_005345.2 + 23204 0.67 0.949087
Target:  5'- cUGCGGGaCUggGACGAGAucguGUGGGCg-- -3'
miRNA:   3'- aGCGCCCaGA--UUGCUUU----UACCUGagg -5'
26256 5' -49.1 NC_005345.2 + 4237 0.67 0.949087
Target:  5'- cCGauGGUCgccgcuGCGGAGcgGGACgaggCCa -3'
miRNA:   3'- aGCgcCCAGau----UGCUUUuaCCUGa---GG- -5'
26256 5' -49.1 NC_005345.2 + 31548 0.67 0.949087
Target:  5'- cUGgGGGUCgAGCGAGGA-GGACg-- -3'
miRNA:   3'- aGCgCCCAGaUUGCUUUUaCCUGagg -5'
26256 5' -49.1 NC_005345.2 + 26774 0.67 0.944216
Target:  5'- gCGCGGGUgcGGCGGAucGUGGcCggcgCCg -3'
miRNA:   3'- aGCGCCCAgaUUGCUUu-UACCuGa---GG- -5'
26256 5' -49.1 NC_005345.2 + 16069 0.67 0.933587
Target:  5'- aUCGCGGGgu---CGGuguGAUGGACaCCc -3'
miRNA:   3'- -AGCGCCCagauuGCUu--UUACCUGaGG- -5'
26256 5' -49.1 NC_005345.2 + 5282 0.67 0.927824
Target:  5'- cUCGgGGGUCggguacuGCGggGGgcGGGC-CCa -3'
miRNA:   3'- -AGCgCCCAGau-----UGCuuUUa-CCUGaGG- -5'
26256 5' -49.1 NC_005345.2 + 15145 0.68 0.915399
Target:  5'- cUGCGGGUCgGGCGGGuucacgaccacGAUGGgguuGCUCa -3'
miRNA:   3'- aGCGCCCAGaUUGCUU-----------UUACC----UGAGg -5'
26256 5' -49.1 NC_005345.2 + 39595 0.68 0.90107
Target:  5'- gCGCGGGgacuACGAGGggcagcucggcguGUGGAC-CCg -3'
miRNA:   3'- aGCGCCCagauUGCUUU-------------UACCUGaGG- -5'
26256 5' -49.1 NC_005345.2 + 16591 0.68 0.894533
Target:  5'- gCGCGGGUC-AACGGAcuggugagaGAcGGGCggcCCg -3'
miRNA:   3'- aGCGCCCAGaUUGCUU---------UUaCCUGa--GG- -5'
26256 5' -49.1 NC_005345.2 + 17291 0.69 0.886997
Target:  5'- gCGCGGGUCUuguCGGccGGAcGGGCgaacCCg -3'
miRNA:   3'- aGCGCCCAGAuu-GCU--UUUaCCUGa---GG- -5'
26256 5' -49.1 NC_005345.2 + 979 0.69 0.886997
Target:  5'- cCGCGGGUC-AAUGAGcuc-GugUCCg -3'
miRNA:   3'- aGCGCCCAGaUUGCUUuuacCugAGG- -5'
26256 5' -49.1 NC_005345.2 + 2060 0.69 0.871083
Target:  5'- -gGCGGGcCgcgGCGAAAAUGcGCUCUu -3'
miRNA:   3'- agCGCCCaGau-UGCUUUUACcUGAGG- -5'
26256 5' -49.1 NC_005345.2 + 26236 0.69 0.854095
Target:  5'- -gGCGGcGUCU--CGGuucAGUGGAUUCCg -3'
miRNA:   3'- agCGCC-CAGAuuGCUu--UUACCUGAGG- -5'
26256 5' -49.1 NC_005345.2 + 41107 0.7 0.824848
Target:  5'- aCGCGGGcCgcagcacgcccGCGguAcgGGGCUCCg -3'
miRNA:   3'- aGCGCCCaGau---------UGCuuUuaCCUGAGG- -5'
26256 5' -49.1 NC_005345.2 + 11604 0.76 0.519291
Target:  5'- gCGUGGGgcggccgCUGGCGGGAGUGGGCg-- -3'
miRNA:   3'- aGCGCCCa------GAUUGCUUUUACCUGagg -5'
26256 5' -49.1 NC_005345.2 + 47271 1.15 0.001902
Target:  5'- cUCGCGGGUCUAACGAAAAUGGACUCCa -3'
miRNA:   3'- -AGCGCCCAGAUUGCUUUUACCUGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.