miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26257 3' -53.4 NC_005345.2 + 18406 0.66 0.809209
Target:  5'- aCCCucgccGGCcUCGCGCUCacggCCGUGAu -3'
miRNA:   3'- -GGGcuuu-UCGaAGCGCGGGa---GGUACU- -5'
26257 3' -53.4 NC_005345.2 + 2913 0.66 0.789592
Target:  5'- aCCGGA----UUCGCGCCgCUCC-UGAc -3'
miRNA:   3'- gGGCUUuucgAAGCGCGG-GAGGuACU- -5'
26257 3' -53.4 NC_005345.2 + 39015 0.66 0.789592
Target:  5'- cCCCGAAcugguGGCUgcuGCGCgUCUCCggGAa -3'
miRNA:   3'- -GGGCUUu----UCGAag-CGCG-GGAGGuaCU- -5'
26257 3' -53.4 NC_005345.2 + 3275 0.66 0.789592
Target:  5'- cCCCGugcgcAGCUgCGUGCCgUCCAc-- -3'
miRNA:   3'- -GGGCuuu--UCGAaGCGCGGgAGGUacu -5'
26257 3' -53.4 NC_005345.2 + 28086 0.66 0.789592
Target:  5'- aCCCGGAGGGU-----GCCgUCCGUGAg -3'
miRNA:   3'- -GGGCUUUUCGaagcgCGGgAGGUACU- -5'
26257 3' -53.4 NC_005345.2 + 5241 0.66 0.779523
Target:  5'- gCCGAcgcGCUgCGCGCCg-CCGUGGc -3'
miRNA:   3'- gGGCUuuuCGAaGCGCGGgaGGUACU- -5'
26257 3' -53.4 NC_005345.2 + 21006 0.66 0.779523
Target:  5'- uCCCGAGGGGCuUUCGCauaccCCCUCg---- -3'
miRNA:   3'- -GGGCUUUUCG-AAGCGc----GGGAGguacu -5'
26257 3' -53.4 NC_005345.2 + 44655 0.66 0.769296
Target:  5'- uCCCGGucGGCUccucCGUGCCgUCCucgcUGAa -3'
miRNA:   3'- -GGGCUuuUCGAa---GCGCGGgAGGu---ACU- -5'
26257 3' -53.4 NC_005345.2 + 2766 0.66 0.769296
Target:  5'- uUCGGAcggcguGGCUgcUCGCcgccGCCCUUCGUGAg -3'
miRNA:   3'- gGGCUUu-----UCGA--AGCG----CGGGAGGUACU- -5'
26257 3' -53.4 NC_005345.2 + 47531 0.67 0.758922
Target:  5'- cCCCGGGAuGCUucccUCGUaGCCCUUCGa-- -3'
miRNA:   3'- -GGGCUUUuCGA----AGCG-CGGGAGGUacu -5'
26257 3' -53.4 NC_005345.2 + 26359 0.67 0.748414
Target:  5'- cCCCGccGAGgaUCGCGCggaucCCUCCcgagGUGAc -3'
miRNA:   3'- -GGGCuuUUCgaAGCGCG-----GGAGG----UACU- -5'
26257 3' -53.4 NC_005345.2 + 44879 0.67 0.745238
Target:  5'- gCCCGAGcuGCccgcaccgccggugUUCGCcggcaGCCCgagCCGUGAg -3'
miRNA:   3'- -GGGCUUuuCG--------------AAGCG-----CGGGa--GGUACU- -5'
26257 3' -53.4 NC_005345.2 + 27967 0.67 0.727043
Target:  5'- aCCCGAAcGGCggUGCGCCgUCgAcGGg -3'
miRNA:   3'- -GGGCUUuUCGaaGCGCGGgAGgUaCU- -5'
26257 3' -53.4 NC_005345.2 + 30135 0.68 0.672109
Target:  5'- gCCCG-AGGGCggCGCGCCaC-CCGUcGAg -3'
miRNA:   3'- -GGGCuUUUCGaaGCGCGG-GaGGUA-CU- -5'
26257 3' -53.4 NC_005345.2 + 11053 0.68 0.649781
Target:  5'- aCCCGA--AGUUUCuGCGUgCgUCCAUGGc -3'
miRNA:   3'- -GGGCUuuUCGAAG-CGCGgG-AGGUACU- -5'
26257 3' -53.4 NC_005345.2 + 46519 0.69 0.638586
Target:  5'- aCCCGGucAGUc-CGCGCCgCUCCAUc- -3'
miRNA:   3'- -GGGCUuuUCGaaGCGCGG-GAGGUAcu -5'
26257 3' -53.4 NC_005345.2 + 28290 0.69 0.616188
Target:  5'- gUCGAcAAGC-UCGCGCCCgCCAaGGg -3'
miRNA:   3'- gGGCUuUUCGaAGCGCGGGaGGUaCU- -5'
26257 3' -53.4 NC_005345.2 + 40830 0.7 0.582724
Target:  5'- gCCGGAAcGCUgcugcugCGCGCCg-CCAUGGc -3'
miRNA:   3'- gGGCUUUuCGAa------GCGCGGgaGGUACU- -5'
26257 3' -53.4 NC_005345.2 + 15214 0.7 0.582724
Target:  5'- gUCGAAcgccuGCUUCGCGUCCUugaCCAUGc -3'
miRNA:   3'- gGGCUUuu---CGAAGCGCGGGA---GGUACu -5'
26257 3' -53.4 NC_005345.2 + 29084 0.7 0.571642
Target:  5'- gCCCGggGugGGCUUCGagggCUCCGUGAa -3'
miRNA:   3'- -GGGCuuU--UCGAAGCgcggGAGGUACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.