Results 21 - 31 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26257 | 3' | -53.4 | NC_005345.2 | + | 39015 | 0.66 | 0.789592 |
Target: 5'- cCCCGAAcugguGGCUgcuGCGCgUCUCCggGAa -3' miRNA: 3'- -GGGCUUu----UCGAag-CGCG-GGAGGuaCU- -5' |
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26257 | 3' | -53.4 | NC_005345.2 | + | 40283 | 0.73 | 0.415473 |
Target: 5'- gUCCGGAGAGCgucaugcCGCGCCC-CCGUu- -3' miRNA: 3'- -GGGCUUUUCGaa-----GCGCGGGaGGUAcu -5' |
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26257 | 3' | -53.4 | NC_005345.2 | + | 40830 | 0.7 | 0.582724 |
Target: 5'- gCCGGAAcGCUgcugcugCGCGCCg-CCAUGGc -3' miRNA: 3'- gGGCUUUuCGAa------GCGCGGgaGGUACU- -5' |
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26257 | 3' | -53.4 | NC_005345.2 | + | 44378 | 0.72 | 0.434852 |
Target: 5'- gCCCGGAAAGgcaCGgGCCCaCCAUGAc -3' miRNA: 3'- -GGGCUUUUCgaaGCgCGGGaGGUACU- -5' |
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26257 | 3' | -53.4 | NC_005345.2 | + | 44655 | 0.66 | 0.769296 |
Target: 5'- uCCCGGucGGCUccucCGUGCCgUCCucgcUGAa -3' miRNA: 3'- -GGGCUuuUCGAa---GCGCGGgAGGu---ACU- -5' |
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26257 | 3' | -53.4 | NC_005345.2 | + | 44879 | 0.67 | 0.745238 |
Target: 5'- gCCCGAGcuGCccgcaccgccggugUUCGCcggcaGCCCgagCCGUGAg -3' miRNA: 3'- -GGGCUUuuCG--------------AAGCG-----CGGGa--GGUACU- -5' |
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26257 | 3' | -53.4 | NC_005345.2 | + | 46519 | 0.69 | 0.638586 |
Target: 5'- aCCCGGucAGUc-CGCGCCgCUCCAUc- -3' miRNA: 3'- -GGGCUuuUCGaaGCGCGG-GAGGUAcu -5' |
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26257 | 3' | -53.4 | NC_005345.2 | + | 47039 | 1.11 | 0.000953 |
Target: 5'- cCCCGAAAAGCUUCGCGCCCUCCAUGAg -3' miRNA: 3'- -GGGCUUUUCGAAGCGCGGGAGGUACU- -5' |
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26257 | 3' | -53.4 | NC_005345.2 | + | 47531 | 0.67 | 0.758922 |
Target: 5'- cCCCGGGAuGCUucccUCGUaGCCCUUCGa-- -3' miRNA: 3'- -GGGCUUUuCGA----AGCG-CGGGAGGUacu -5' |
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26257 | 3' | -53.4 | NC_005345.2 | + | 47612 | 0.71 | 0.506501 |
Target: 5'- gCCCGGuuGGCUcgaCGCGCCCgacacCCAaGAu -3' miRNA: 3'- -GGGCUuuUCGAa--GCGCGGGa----GGUaCU- -5' |
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26257 | 3' | -53.4 | NC_005345.2 | + | 48849 | 0.72 | 0.440767 |
Target: 5'- uUCCGggGGGCggggcggugcugCGUGCCCUaCCGUGu -3' miRNA: 3'- -GGGCuuUUCGaa----------GCGCGGGA-GGUACu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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