miRNA display CGI


Results 21 - 40 of 77 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26258 3' -51.5 NC_005345.2 + 12457 0.66 0.854617
Target:  5'- gCGCAGCUcg-C-GGGGCAggCGAGGCg -3'
miRNA:   3'- -GCGUCGAcuaGuUCCUGUa-GCUCUGg -5'
26258 3' -51.5 NC_005345.2 + 20936 0.66 0.854617
Target:  5'- uGCAgGUUGAugucgUCGAGGACuccuucgcguuGUCGAG-CCg -3'
miRNA:   3'- gCGU-CGACU-----AGUUCCUG-----------UAGCUCuGG- -5'
26258 3' -51.5 NC_005345.2 + 34495 0.66 0.854617
Target:  5'- cCGCccGGCcGGUgcCGAGGACgcgGUCGAGGCg -3'
miRNA:   3'- -GCG--UCGaCUA--GUUCCUG---UAGCUCUGg -5'
26258 3' -51.5 NC_005345.2 + 27537 0.66 0.85375
Target:  5'- aCGCGGC-GAUCAcccGcGGCAUCGgcucgucGGACCc -3'
miRNA:   3'- -GCGUCGaCUAGUu--C-CUGUAGC-------UCUGG- -5'
26258 3' -51.5 NC_005345.2 + 26618 0.67 0.84584
Target:  5'- gCGCAgGCcGGUgugccCGAGGACuacacCGAGGCCg -3'
miRNA:   3'- -GCGU-CGaCUA-----GUUCCUGua---GCUCUGG- -5'
26258 3' -51.5 NC_005345.2 + 3082 0.67 0.836824
Target:  5'- gGCGGCcccggccgccUGAUCGAcccucgggccccGGACAUaccgaGGGGCCg -3'
miRNA:   3'- gCGUCG----------ACUAGUU------------CCUGUAg----CUCUGG- -5'
26258 3' -51.5 NC_005345.2 + 36259 0.67 0.834074
Target:  5'- uCGCGGC-GAUCGAGGcgagcggccacccgGCggCGAG-CCa -3'
miRNA:   3'- -GCGUCGaCUAGUUCC--------------UGuaGCUCuGG- -5'
26258 3' -51.5 NC_005345.2 + 39390 0.67 0.827579
Target:  5'- cCGCcGgUGuccugCAGGGgaaccgcaGCAUCGAGGCCg -3'
miRNA:   3'- -GCGuCgACua---GUUCC--------UGUAGCUCUGG- -5'
26258 3' -51.5 NC_005345.2 + 24969 0.67 0.827579
Target:  5'- gGCGGCcGGUCGAGuGGCAagugcccgucgUCGAGgugcucGCCg -3'
miRNA:   3'- gCGUCGaCUAGUUC-CUGU-----------AGCUC------UGG- -5'
26258 3' -51.5 NC_005345.2 + 34918 0.67 0.818115
Target:  5'- gGCAGCgugggccgGAUCAAGGcCgGUUGGGAUg -3'
miRNA:   3'- gCGUCGa-------CUAGUUCCuG-UAGCUCUGg -5'
26258 3' -51.5 NC_005345.2 + 26976 0.67 0.818115
Target:  5'- uCGCGGCgu-UCGAcGGGCuGUCGAG-CCu -3'
miRNA:   3'- -GCGUCGacuAGUU-CCUG-UAGCUCuGG- -5'
26258 3' -51.5 NC_005345.2 + 24925 0.67 0.818115
Target:  5'- gCGCGGCaGAuagaugaccgugUCGA-GACGUCGAGcCCg -3'
miRNA:   3'- -GCGUCGaCU------------AGUUcCUGUAGCUCuGG- -5'
26258 3' -51.5 NC_005345.2 + 39587 0.67 0.818115
Target:  5'- uCGCAGgUGcgCGGGGACuacgaGGGGCa -3'
miRNA:   3'- -GCGUCgACuaGUUCCUGuag--CUCUGg -5'
26258 3' -51.5 NC_005345.2 + 10516 0.67 0.818115
Target:  5'- gGCAGgacggGAUCGccgAGGccgACGUCGAGAUCg -3'
miRNA:   3'- gCGUCga---CUAGU---UCC---UGUAGCUCUGG- -5'
26258 3' -51.5 NC_005345.2 + 16334 0.67 0.818115
Target:  5'- gCGCAGCgaaagcucGUCGGcGGCAUCGcGGCCg -3'
miRNA:   3'- -GCGUCGac------UAGUUcCUGUAGCuCUGG- -5'
26258 3' -51.5 NC_005345.2 + 38251 0.67 0.818115
Target:  5'- uGCAgGCgUGAUCGAuGACGUgCGGGugCg -3'
miRNA:   3'- gCGU-CG-ACUAGUUcCUGUA-GCUCugG- -5'
26258 3' -51.5 NC_005345.2 + 5664 0.67 0.818115
Target:  5'- gGCGGC-GAUCGAGGucaccuguGCGUCGGuGAgCg -3'
miRNA:   3'- gCGUCGaCUAGUUCC--------UGUAGCU-CUgG- -5'
26258 3' -51.5 NC_005345.2 + 45881 0.67 0.817157
Target:  5'- aCGCAGCUGcgCAcgGGGuaccucgGCA-CGAGcGCCg -3'
miRNA:   3'- -GCGUCGACuaGU--UCC-------UGUaGCUC-UGG- -5'
26258 3' -51.5 NC_005345.2 + 23660 0.67 0.808443
Target:  5'- aGCAGCcagaaGUCGGGGuuGUCGAGuuCCg -3'
miRNA:   3'- gCGUCGac---UAGUUCCugUAGCUCu-GG- -5'
26258 3' -51.5 NC_005345.2 + 33814 0.67 0.808443
Target:  5'- aCGC-GCcGcgUAAGGACAUCGcgucacuGACCa -3'
miRNA:   3'- -GCGuCGaCuaGUUCCUGUAGCu------CUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.