miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26259 5' -51.4 NC_005345.2 + 45492 0.66 0.844987
Target:  5'- gGCGAAGGUGGuGGGggCCGCGuccGCGa -3'
miRNA:   3'- aCGCUUUCAUC-UUCuaGGCGUc--CGUa -5'
26259 5' -51.4 NC_005345.2 + 40251 0.66 0.826235
Target:  5'- gGCGAGcgGGgacGggGcgCCgGCGGGCAUg -3'
miRNA:   3'- aCGCUU--UCau-CuuCuaGG-CGUCCGUA- -5'
26259 5' -51.4 NC_005345.2 + 24645 0.66 0.816511
Target:  5'- cGCGguGGUcGAccaGGAUcCCGCGGGCc- -3'
miRNA:   3'- aCGCuuUCAuCU---UCUA-GGCGUCCGua -5'
26259 5' -51.4 NC_005345.2 + 16024 0.66 0.816511
Target:  5'- cGCGAGGGU--GAGAcCCGC-GGCGa -3'
miRNA:   3'- aCGCUUUCAucUUCUaGGCGuCCGUa -5'
26259 5' -51.4 NC_005345.2 + 7730 0.68 0.754067
Target:  5'- -aCGA----AGGAGAUCCGCAGGUg- -3'
miRNA:   3'- acGCUuucaUCUUCUAGGCGUCCGua -5'
26259 5' -51.4 NC_005345.2 + 31889 0.69 0.698098
Target:  5'- gUGCGGuGAGUucGggGAUCgGCGGGUg- -3'
miRNA:   3'- -ACGCU-UUCAu-CuuCUAGgCGUCCGua -5'
26259 5' -51.4 NC_005345.2 + 423 0.69 0.698098
Target:  5'- aUGCGAGGGggcGGAcguaguacgggcGGGUCCGUGGcGCAUa -3'
miRNA:   3'- -ACGCUUUCa--UCU------------UCUAGGCGUC-CGUA- -5'
26259 5' -51.4 NC_005345.2 + 6545 0.69 0.686636
Target:  5'- gGCGGGgcGGUGGggGAcguggcuaCGCGGGCGg -3'
miRNA:   3'- aCGCUU--UCAUCuuCUag------GCGUCCGUa -5'
26259 5' -51.4 NC_005345.2 + 23463 0.69 0.686636
Target:  5'- gGCGAu-GUGGAuuGAgucgCCGCAGGCc- -3'
miRNA:   3'- aCGCUuuCAUCUu-CUa---GGCGUCCGua -5'
26259 5' -51.4 NC_005345.2 + 26883 0.69 0.675116
Target:  5'- gUGCGGucgauGGGU-GAGGcgCUGCAGGCGg -3'
miRNA:   3'- -ACGCU-----UUCAuCUUCuaGGCGUCCGUa -5'
26259 5' -51.4 NC_005345.2 + 34892 0.7 0.640334
Target:  5'- aGCGAcacGUuccGGggGAUCgUGCAGGCAg -3'
miRNA:   3'- aCGCUuu-CA---UCuuCUAG-GCGUCCGUa -5'
26259 5' -51.4 NC_005345.2 + 19312 0.73 0.429309
Target:  5'- gUGCGAgggcuggaAAGUGGccGAUCUGCGGGCc- -3'
miRNA:   3'- -ACGCU--------UUCAUCuuCUAGGCGUCCGua -5'
26259 5' -51.4 NC_005345.2 + 45692 0.74 0.380545
Target:  5'- cGCGAccGUGGAcAGGUCCcgGCGGGCGg -3'
miRNA:   3'- aCGCUuuCAUCU-UCUAGG--CGUCCGUa -5'
26259 5' -51.4 NC_005345.2 + 34063 0.75 0.362103
Target:  5'- gGCGgcGGUAGGccuGAUCaCGCAGGCGc -3'
miRNA:   3'- aCGCuuUCAUCUu--CUAG-GCGUCCGUa -5'
26259 5' -51.4 NC_005345.2 + 46836 1.07 0.002364
Target:  5'- uUGCGAAAGUAGAAGAUCCGCAGGCAUg -3'
miRNA:   3'- -ACGCUUUCAUCUUCUAGGCGUCCGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.