miRNA display CGI


Results 41 - 60 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26260 5' -60.8 NC_005345.2 + 3430 0.67 0.356001
Target:  5'- -cGCGGCGG-CGGGCGGcgaUGCGggcCCCGa -3'
miRNA:   3'- gaCGCUGCUgGCCCGUC---ACGU---GGGCc -5'
26260 5' -60.8 NC_005345.2 + 39983 0.67 0.347907
Target:  5'- -cGCacACGACCGGcCcGUGCACCCGc -3'
miRNA:   3'- gaCGc-UGCUGGCCcGuCACGUGGGCc -5'
26260 5' -60.8 NC_005345.2 + 8317 0.67 0.356818
Target:  5'- -gGCGGCGcgcagcagcagcguuCCGgcGGCGGUGCAcgcCCCGGu -3'
miRNA:   3'- gaCGCUGCu--------------GGC--CCGUCACGU---GGGCC- -5'
26260 5' -60.8 NC_005345.2 + 4284 0.67 0.364227
Target:  5'- -cGCGACGcgGCCGccGCGGgGCGCCuCGGa -3'
miRNA:   3'- gaCGCUGC--UGGCc-CGUCaCGUGG-GCC- -5'
26260 5' -60.8 NC_005345.2 + 16872 0.67 0.389683
Target:  5'- -cGCGguACGGCCGagcguggcGGCGGaagGCGCCCGu -3'
miRNA:   3'- gaCGC--UGCUGGC--------CCGUCa--CGUGGGCc -5'
26260 5' -60.8 NC_005345.2 + 10675 0.67 0.364227
Target:  5'- -gGCG-CGGCgCGGGaAGUGCccgcgcuguGCCCGGc -3'
miRNA:   3'- gaCGCuGCUG-GCCCgUCACG---------UGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 17144 0.67 0.381069
Target:  5'- -cGCGACGuugguCgGGGCGGUcGUGCCgaCGGg -3'
miRNA:   3'- gaCGCUGCu----GgCCCGUCA-CGUGG--GCC- -5'
26260 5' -60.8 NC_005345.2 + 33017 0.67 0.381069
Target:  5'- -cGuCGACGAUCGGGCucggccgcggGGUGCgguCCGGc -3'
miRNA:   3'- gaC-GCUGCUGGCCCG----------UCACGug-GGCC- -5'
26260 5' -60.8 NC_005345.2 + 23297 0.67 0.375961
Target:  5'- -gGCGACGGCCGGccguuGUccucgguccgcgucgGGUGCGCgCCGa -3'
miRNA:   3'- gaCGCUGCUGGCC-----CG---------------UCACGUG-GGCc -5'
26260 5' -60.8 NC_005345.2 + 39662 0.67 0.380214
Target:  5'- -cGCGugcuCGACuCGGGCGGcgugaucuuccUGCaguucgcGCCCGGg -3'
miRNA:   3'- gaCGCu---GCUG-GCCCGUC-----------ACG-------UGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 34756 0.67 0.381069
Target:  5'- -cGCGGCGGC--GGCGGUGaCGCgCGGc -3'
miRNA:   3'- gaCGCUGCUGgcCCGUCAC-GUGgGCC- -5'
26260 5' -60.8 NC_005345.2 + 46150 0.67 0.364227
Target:  5'- -cGCGGUGgguuccACCGGGCAGcccuccUGCACCCa- -3'
miRNA:   3'- gaCGCUGC------UGGCCCGUC------ACGUGGGcc -5'
26260 5' -60.8 NC_005345.2 + 20534 0.67 0.355186
Target:  5'- cCUGCGGCGACaCGcccGGCAugcgcgauucgguGUGCGgucggucacauuCCCGGg -3'
miRNA:   3'- -GACGCUGCUG-GC---CCGU-------------CACGU------------GGGCC- -5'
26260 5' -60.8 NC_005345.2 + 30217 0.67 0.347104
Target:  5'- -gGCGACGAUCGcgcauccGGCGGUG-AgCCGGu -3'
miRNA:   3'- gaCGCUGCUGGC-------CCGUCACgUgGGCC- -5'
26260 5' -60.8 NC_005345.2 + 19253 0.67 0.389683
Target:  5'- -gGCGaccGCGACCGGGU---GCACCUGu -3'
miRNA:   3'- gaCGC---UGCUGGCCCGucaCGUGGGCc -5'
26260 5' -60.8 NC_005345.2 + 383 0.67 0.347907
Target:  5'- -cGUGGCGAacaCGuGGCGaaggucGUGCACCCGcGg -3'
miRNA:   3'- gaCGCUGCUg--GC-CCGU------CACGUGGGC-C- -5'
26260 5' -60.8 NC_005345.2 + 6640 0.68 0.316858
Target:  5'- gUGCGACGgcgucACCGaGCAGcUG-ACCCGGa -3'
miRNA:   3'- gACGCUGC-----UGGCcCGUC-ACgUGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 38875 0.68 0.32442
Target:  5'- gUGuCGcCGGCCGcgaguggacGGCAGagaucgGCGCCCGGg -3'
miRNA:   3'- gAC-GCuGCUGGC---------CCGUCa-----CGUGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 26487 0.68 0.316858
Target:  5'- -aGCGAcugccCGACCGuccGCAGgucgaccccuUGCACCCGGc -3'
miRNA:   3'- gaCGCU-----GCUGGCc--CGUC----------ACGUGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 18798 0.68 0.32442
Target:  5'- -cGCGACcGCCGGGguugcCGGgGCACuuGGg -3'
miRNA:   3'- gaCGCUGcUGGCCC-----GUCaCGUGggCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.