Results 61 - 80 of 115 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26260 | 5' | -60.8 | NC_005345.2 | + | 26487 | 0.68 | 0.316858 |
Target: 5'- -aGCGAcugccCGACCGuccGCAGgucgaccccuUGCACCCGGc -3' miRNA: 3'- gaCGCU-----GCUGGCc--CGUC----------ACGUGGGCC- -5' |
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26260 | 5' | -60.8 | NC_005345.2 | + | 41989 | 0.68 | 0.299972 |
Target: 5'- cCUGCGAcagcggguccgaccCGucCCGGGCcacGUGCcccGCCCGGu -3' miRNA: 3'- -GACGCU--------------GCu-GGCCCGu--CACG---UGGGCC- -5' |
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26260 | 5' | -60.8 | NC_005345.2 | + | 20991 | 0.68 | 0.301412 |
Target: 5'- -gGCGAggaacgcCGACCGGGCGacgcGUucGCcgGCCCGGg -3' miRNA: 3'- gaCGCU-------GCUGGCCCGU----CA--CG--UGGGCC- -5' |
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26260 | 5' | -60.8 | NC_005345.2 | + | 38875 | 0.68 | 0.32442 |
Target: 5'- gUGuCGcCGGCCGcgaguggacGGCAGagaucgGCGCCCGGg -3' miRNA: 3'- gAC-GCuGCUGGC---------CCGUCa-----CGUGGGCC- -5' |
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26260 | 5' | -60.8 | NC_005345.2 | + | 26612 | 0.68 | 0.332116 |
Target: 5'- gCUGCGGCG-CaGGcCGGUGUGCCCGa -3' miRNA: 3'- -GACGCUGCuGgCCcGUCACGUGGGCc -5' |
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26260 | 5' | -60.8 | NC_005345.2 | + | 18798 | 0.68 | 0.32442 |
Target: 5'- -cGCGACcGCCGGGguugcCGGgGCACuuGGg -3' miRNA: 3'- gaCGCUGcUGGCCC-----GUCaCGUGggCC- -5' |
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26260 | 5' | -60.8 | NC_005345.2 | + | 30919 | 0.68 | 0.32442 |
Target: 5'- -gGUGACGACCGccGGCggccgcucacGGUGCACggccgcgaCCGGg -3' miRNA: 3'- gaCGCUGCUGGC--CCG----------UCACGUG--------GGCC- -5' |
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26260 | 5' | -60.8 | NC_005345.2 | + | 6640 | 0.68 | 0.316858 |
Target: 5'- gUGCGACGgcgucACCGaGCAGcUG-ACCCGGa -3' miRNA: 3'- gACGCUGC-----UGGCcCGUC-ACgUGGGCC- -5' |
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26260 | 5' | -60.8 | NC_005345.2 | + | 31044 | 0.68 | 0.309429 |
Target: 5'- gUGCGGCGACgaucuuccaCGGG-GGUgcgaacccgcGCACCCGGu -3' miRNA: 3'- gACGCUGCUG---------GCCCgUCA----------CGUGGGCC- -5' |
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26260 | 5' | -60.8 | NC_005345.2 | + | 3215 | 0.68 | 0.316109 |
Target: 5'- -gGCGAUGACagcggacaguuCGGGCAgcgcacuGUGCACgCGGc -3' miRNA: 3'- gaCGCUGCUG-----------GCCCGU-------CACGUGgGCC- -5' |
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26260 | 5' | -60.8 | NC_005345.2 | + | 1088 | 0.68 | 0.316858 |
Target: 5'- cCU-CGACGGCgaCGaGCGGUGCGCgCCGGa -3' miRNA: 3'- -GAcGCUGCUG--GCcCGUCACGUG-GGCC- -5' |
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26260 | 5' | -60.8 | NC_005345.2 | + | 9359 | 0.69 | 0.294973 |
Target: 5'- gCUGCgGGCGGCCGGGCucgaccacuacGG-GCAgCCGc -3' miRNA: 3'- -GACG-CUGCUGGCCCG-----------UCaCGUgGGCc -5' |
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26260 | 5' | -60.8 | NC_005345.2 | + | 42951 | 0.69 | 0.281047 |
Target: 5'- -cGCGGacgGGCCGGGCGGcacgcGCACgaaCCGGg -3' miRNA: 3'- gaCGCUg--CUGGCCCGUCa----CGUG---GGCC- -5' |
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26260 | 5' | -60.8 | NC_005345.2 | + | 33900 | 0.69 | 0.274282 |
Target: 5'- -cGCG-CGGCCGGGCAGcUG-AUCCGu -3' miRNA: 3'- gaCGCuGCUGGCCCGUC-ACgUGGGCc -5' |
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26260 | 5' | -60.8 | NC_005345.2 | + | 30532 | 0.69 | 0.274282 |
Target: 5'- -aGCgGACGAUCGGGCAGUauGCcgagACCCu- -3' miRNA: 3'- gaCG-CUGCUGGCCCGUCA--CG----UGGGcc -5' |
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26260 | 5' | -60.8 | NC_005345.2 | + | 30470 | 0.69 | 0.274282 |
Target: 5'- gCUGCGcGCGAucugcgUCGcGGUGGUGCGCCgGGu -3' miRNA: 3'- -GACGC-UGCU------GGC-CCGUCACGUGGgCC- -5' |
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26260 | 5' | -60.8 | NC_005345.2 | + | 45854 | 0.69 | 0.287943 |
Target: 5'- -gGCGACGAUCguggGGGCGGggaGCCCGa -3' miRNA: 3'- gaCGCUGCUGG----CCCGUCacgUGGGCc -5' |
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26260 | 5' | -60.8 | NC_005345.2 | + | 30586 | 0.69 | 0.294972 |
Target: 5'- --cCGACG-CUGGGCGc-GCACCCGGc -3' miRNA: 3'- gacGCUGCuGGCCCGUcaCGUGGGCC- -5' |
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26260 | 5' | -60.8 | NC_005345.2 | + | 33191 | 0.69 | 0.294972 |
Target: 5'- -gGCGACGAUcgCGGGCAGcGUGCUCa- -3' miRNA: 3'- gaCGCUGCUG--GCCCGUCaCGUGGGcc -5' |
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26260 | 5' | -60.8 | NC_005345.2 | + | 19329 | 0.69 | 0.274282 |
Target: 5'- -cGCGACGauGCCGGGC--UGCuCgCCGGg -3' miRNA: 3'- gaCGCUGC--UGGCCCGucACGuG-GGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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