miRNA display CGI


Results 21 - 40 of 115 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26260 5' -60.8 NC_005345.2 + 40806 0.71 0.203025
Target:  5'- --aCGACGACCgGGGC-GUGCACcgccgCCGGa -3'
miRNA:   3'- gacGCUGCUGG-CCCGuCACGUG-----GGCC- -5'
26260 5' -60.8 NC_005345.2 + 14380 0.71 0.203025
Target:  5'- gCU-CGGCGACCGGcCGGUGCcgAUCCGGc -3'
miRNA:   3'- -GAcGCUGCUGGCCcGUCACG--UGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 7243 0.71 0.197875
Target:  5'- -gGCGACGACCaGGGCgacgacgagcAGcUGCucgacaGCCCGGa -3'
miRNA:   3'- gaCGCUGCUGG-CCCG----------UC-ACG------UGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 43792 0.71 0.192839
Target:  5'- cCUGgaGAUcGCCGGGCAGcGCGCCCa- -3'
miRNA:   3'- -GACg-CUGcUGGCCCGUCaCGUGGGcc -5'
26260 5' -60.8 NC_005345.2 + 15654 0.71 0.192839
Target:  5'- -cGCaauGCGACCGGGCccgguGGUGaCACaCCGGg -3'
miRNA:   3'- gaCGc--UGCUGGCCCG-----UCAC-GUG-GGCC- -5'
26260 5' -60.8 NC_005345.2 + 31721 0.71 0.219176
Target:  5'- gUGCG-CgGACgGGGUucgGGUGCACCuCGGg -3'
miRNA:   3'- gACGCuG-CUGgCCCG---UCACGUGG-GCC- -5'
26260 5' -60.8 NC_005345.2 + 36609 0.7 0.25477
Target:  5'- aUGCagauGGCGGCCGGGCucGUGCcgcuGCgCGGg -3'
miRNA:   3'- gACG----CUGCUGGCCCGu-CACG----UGgGCC- -5'
26260 5' -60.8 NC_005345.2 + 40502 0.7 0.242405
Target:  5'- -cGCGACGAUCGGcGCcgaGGUGUACugcgacgccgCCGGa -3'
miRNA:   3'- gaCGCUGCUGGCC-CG---UCACGUG----------GGCC- -5'
26260 5' -60.8 NC_005345.2 + 20507 0.7 0.246675
Target:  5'- -aGCGGaaugccCGAccugaaaaacccuuCCGGGUAGUGCGuCCCGGc -3'
miRNA:   3'- gaCGCU------GCU--------------GGCCCGUCACGU-GGGCC- -5'
26260 5' -60.8 NC_005345.2 + 1179 0.7 0.242405
Target:  5'- -cGCGGCGcACaCGGGCGGcucgGCAgUCCGGc -3'
miRNA:   3'- gaCGCUGC-UG-GCCCGUCa---CGU-GGGCC- -5'
26260 5' -60.8 NC_005345.2 + 37920 0.7 0.236412
Target:  5'- gCUGCGGCaGCgCGGGCAGUcauGCccauGCCCGu -3'
miRNA:   3'- -GACGCUGcUG-GCCCGUCA---CG----UGGGCc -5'
26260 5' -60.8 NC_005345.2 + 19329 0.69 0.274282
Target:  5'- -cGCGACGauGCCGGGC--UGCuCgCCGGg -3'
miRNA:   3'- gaCGCUGC--UGGCCCGucACGuG-GGCC- -5'
26260 5' -60.8 NC_005345.2 + 45854 0.69 0.287943
Target:  5'- -gGCGACGAUCguggGGGCGGggaGCCCGa -3'
miRNA:   3'- gaCGCUGCUGG----CCCGUCacgUGGGCc -5'
26260 5' -60.8 NC_005345.2 + 35013 0.69 0.294972
Target:  5'- gCUGCGGCGGCCacguggGGGCGG-Ga--CCGGu -3'
miRNA:   3'- -GACGCUGCUGG------CCCGUCaCgugGGCC- -5'
26260 5' -60.8 NC_005345.2 + 30586 0.69 0.294972
Target:  5'- --cCGACG-CUGGGCGc-GCACCCGGc -3'
miRNA:   3'- gacGCUGCuGGCCCGUcaCGUGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 33191 0.69 0.294972
Target:  5'- -gGCGACGAUcgCGGGCAGcGUGCUCa- -3'
miRNA:   3'- gaCGCUGCUG--GCCCGUCaCGUGGGcc -5'
26260 5' -60.8 NC_005345.2 + 5310 0.69 0.259219
Target:  5'- --cCGuCGACCGGGCAGUacGUgaucagccugaucgACCCGGa -3'
miRNA:   3'- gacGCuGCUGGCCCGUCA--CG--------------UGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 48898 0.69 0.261144
Target:  5'- -gGCGAgGugCGGGCGGcgaugGCuCCCGa -3'
miRNA:   3'- gaCGCUgCugGCCCGUCa----CGuGGGCc -5'
26260 5' -60.8 NC_005345.2 + 646 0.69 0.267648
Target:  5'- cCUGCGGCguGAgCGGGaCcGUGCggaACCCGGc -3'
miRNA:   3'- -GACGCUG--CUgGCCC-GuCACG---UGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 30470 0.69 0.274282
Target:  5'- gCUGCGcGCGAucugcgUCGcGGUGGUGCGCCgGGu -3'
miRNA:   3'- -GACGC-UGCU------GGC-CCGUCACGUGGgCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.