miRNA display CGI


Results 41 - 60 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26260 5' -60.8 NC_005345.2 + 35013 0.69 0.294972
Target:  5'- gCUGCGGCGGCCacguggGGGCGG-Ga--CCGGu -3'
miRNA:   3'- -GACGCUGCUGG------CCCGUCaCgugGGCC- -5'
26260 5' -60.8 NC_005345.2 + 30586 0.69 0.294972
Target:  5'- --cCGACG-CUGGGCGc-GCACCCGGc -3'
miRNA:   3'- gacGCUGCuGGCCCGUcaCGUGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 9359 0.69 0.294973
Target:  5'- gCUGCgGGCGGCCGGGCucgaccacuacGG-GCAgCCGc -3'
miRNA:   3'- -GACG-CUGCUGGCCCG-----------UCaCGUgGGCc -5'
26260 5' -60.8 NC_005345.2 + 33191 0.69 0.294972
Target:  5'- -gGCGACGAUcgCGGGCAGcGUGCUCa- -3'
miRNA:   3'- gaCGCUGCUG--GCCCGUCaCGUGGGcc -5'
26260 5' -60.8 NC_005345.2 + 18798 0.68 0.32442
Target:  5'- -cGCGACcGCCGGGguugcCGGgGCACuuGGg -3'
miRNA:   3'- gaCGCUGcUGGCCC-----GUCaCGUGggCC- -5'
26260 5' -60.8 NC_005345.2 + 30919 0.68 0.32442
Target:  5'- -gGUGACGACCGccGGCggccgcucacGGUGCACggccgcgaCCGGg -3'
miRNA:   3'- gaCGCUGCUGGC--CCG----------UCACGUG--------GGCC- -5'
26260 5' -60.8 NC_005345.2 + 26612 0.68 0.332116
Target:  5'- gCUGCGGCG-CaGGcCGGUGUGCCCGa -3'
miRNA:   3'- -GACGCUGCuGgCCcGUCACGUGGGCc -5'
26260 5' -60.8 NC_005345.2 + 36946 0.68 0.332116
Target:  5'- -gGCGGCGGCCGGaCAGcgGCAgaCGGc -3'
miRNA:   3'- gaCGCUGCUGGCCcGUCa-CGUggGCC- -5'
26260 5' -60.8 NC_005345.2 + 26487 0.68 0.316858
Target:  5'- -aGCGAcugccCGACCGuccGCAGgucgaccccuUGCACCCGGc -3'
miRNA:   3'- gaCGCU-----GCUGGCc--CGUC----------ACGUGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 45467 0.68 0.332116
Target:  5'- -aGaCGGCGGCCGGGguGgGCAUgUCGGc -3'
miRNA:   3'- gaC-GCUGCUGGCCCguCaCGUG-GGCC- -5'
26260 5' -60.8 NC_005345.2 + 34582 0.68 0.316858
Target:  5'- gUGCcgacACGGCCGGGCccGUGCcguaCCGGg -3'
miRNA:   3'- gACGc---UGCUGGCCCGu-CACGug--GGCC- -5'
26260 5' -60.8 NC_005345.2 + 46689 0.68 0.30943
Target:  5'- -cGCGcAgGACUGGGCAG-GCcuACaCCGGg -3'
miRNA:   3'- gaCGC-UgCUGGCCCGUCaCG--UG-GGCC- -5'
26260 5' -60.8 NC_005345.2 + 38875 0.68 0.32442
Target:  5'- gUGuCGcCGGCCGcgaguggacGGCAGagaucgGCGCCCGGg -3'
miRNA:   3'- gAC-GCuGCUGGC---------CCGUCa-----CGUGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 20991 0.68 0.301412
Target:  5'- -gGCGAggaacgcCGACCGGGCGacgcGUucGCcgGCCCGGg -3'
miRNA:   3'- gaCGCU-------GCUGGCCCGU----CA--CG--UGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 41989 0.68 0.299972
Target:  5'- cCUGCGAcagcggguccgaccCGucCCGGGCcacGUGCcccGCCCGGu -3'
miRNA:   3'- -GACGCU--------------GCu-GGCCCGu--CACG---UGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 31044 0.68 0.309429
Target:  5'- gUGCGGCGACgaucuuccaCGGG-GGUgcgaacccgcGCACCCGGu -3'
miRNA:   3'- gACGCUGCUG---------GCCCgUCA----------CGUGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 3215 0.68 0.316109
Target:  5'- -gGCGAUGACagcggacaguuCGGGCAgcgcacuGUGCACgCGGc -3'
miRNA:   3'- gaCGCUGCUG-----------GCCCGU-------CACGUGgGCC- -5'
26260 5' -60.8 NC_005345.2 + 1088 0.68 0.316858
Target:  5'- cCU-CGACGGCgaCGaGCGGUGCGCgCCGGa -3'
miRNA:   3'- -GAcGCUGCUG--GCcCGUCACGUG-GGCC- -5'
26260 5' -60.8 NC_005345.2 + 6640 0.68 0.316858
Target:  5'- gUGCGACGgcgucACCGaGCAGcUG-ACCCGGa -3'
miRNA:   3'- gACGCUGC-----UGGCcCGUC-ACgUGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 30217 0.67 0.347104
Target:  5'- -gGCGACGAUCGcgcauccGGCGGUG-AgCCGGu -3'
miRNA:   3'- gaCGCUGCUGGC-------CCGUCACgUgGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.