miRNA display CGI


Results 81 - 100 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26260 5' -60.8 NC_005345.2 + 34756 0.67 0.381069
Target:  5'- -cGCGGCGGC--GGCGGUGaCGCgCGGc -3'
miRNA:   3'- gaCGCUGCUGgcCCGUCAC-GUGgGCC- -5'
26260 5' -60.8 NC_005345.2 + 35013 0.69 0.294972
Target:  5'- gCUGCGGCGGCCacguggGGGCGG-Ga--CCGGu -3'
miRNA:   3'- -GACGCUGCUGG------CCCGUCaCgugGGCC- -5'
26260 5' -60.8 NC_005345.2 + 35740 0.73 0.156466
Target:  5'- -cGCGGCGGCCGaacgaGCGGcgGCAuCCCGGg -3'
miRNA:   3'- gaCGCUGCUGGCc----CGUCa-CGU-GGGCC- -5'
26260 5' -60.8 NC_005345.2 + 36260 0.73 0.156466
Target:  5'- -cGCGGCGAUCGaGGCgAGcgGcCACCCGGc -3'
miRNA:   3'- gaCGCUGCUGGC-CCG-UCa-C-GUGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 36609 0.7 0.25477
Target:  5'- aUGCagauGGCGGCCGGGCucGUGCcgcuGCgCGGg -3'
miRNA:   3'- gACG----CUGCUGGCCCGu-CACG----UGgGCC- -5'
26260 5' -60.8 NC_005345.2 + 36784 0.66 0.416275
Target:  5'- gCUGCGagGCG-UCGGGCcccGUGCAgCCGa -3'
miRNA:   3'- -GACGC--UGCuGGCCCGu--CACGUgGGCc -5'
26260 5' -60.8 NC_005345.2 + 36830 0.67 0.347907
Target:  5'- -aGgGACGACCGaucGGCGccGcGCACUCGGg -3'
miRNA:   3'- gaCgCUGCUGGC---CCGU--CaCGUGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 36946 0.68 0.332116
Target:  5'- -gGCGGCGGCCGGaCAGcgGCAgaCGGc -3'
miRNA:   3'- gaCGCUGCUGGCCcGUCa-CGUggGCC- -5'
26260 5' -60.8 NC_005345.2 + 37032 0.66 0.425383
Target:  5'- -aGCGGC-ACCGGGCgAGccgGgAUCCGGc -3'
miRNA:   3'- gaCGCUGcUGGCCCG-UCa--CgUGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 37920 0.7 0.236412
Target:  5'- gCUGCGGCaGCgCGGGCAGUcauGCccauGCCCGu -3'
miRNA:   3'- -GACGCUGcUG-GCCCGUCA---CG----UGGGCc -5'
26260 5' -60.8 NC_005345.2 + 38382 0.66 0.443948
Target:  5'- gCUGUcucGACGGCC-GGCAG-GgGCUCGGc -3'
miRNA:   3'- -GACG---CUGCUGGcCCGUCaCgUGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 38875 0.68 0.32442
Target:  5'- gUGuCGcCGGCCGcgaguggacGGCAGagaucgGCGCCCGGg -3'
miRNA:   3'- gAC-GCuGCUGGC---------CCGUCa-----CGUGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 39662 0.67 0.380214
Target:  5'- -cGCGugcuCGACuCGGGCGGcgugaucuuccUGCaguucgcGCCCGGg -3'
miRNA:   3'- gaCGCu---GCUG-GCCCGUC-----------ACG-------UGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 39983 0.67 0.347907
Target:  5'- -cGCacACGACCGGcCcGUGCACCCGc -3'
miRNA:   3'- gaCGc-UGCUGGCCcGuCACGUGGGCc -5'
26260 5' -60.8 NC_005345.2 + 40056 0.82 0.035302
Target:  5'- -cGCGACGugCGGGCGGUcGCcggcgacggcgGCCCGGa -3'
miRNA:   3'- gaCGCUGCugGCCCGUCA-CG-----------UGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 40502 0.7 0.242405
Target:  5'- -cGCGACGAUCGGcGCcgaGGUGUACugcgacgccgCCGGa -3'
miRNA:   3'- gaCGCUGCUGGCC-CG---UCACGUG----------GGCC- -5'
26260 5' -60.8 NC_005345.2 + 40806 0.71 0.203025
Target:  5'- --aCGACGACCgGGGC-GUGCACcgccgCCGGa -3'
miRNA:   3'- gacGCUGCUGG-CCCGuCACGUG-----GGCC- -5'
26260 5' -60.8 NC_005345.2 + 41037 0.73 0.156053
Target:  5'- -cGaCGGCGGCCGGGUcggucuugcggaAGUGCucuugcaGCCCGGc -3'
miRNA:   3'- gaC-GCUGCUGGCCCG------------UCACG-------UGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 41989 0.68 0.299972
Target:  5'- cCUGCGAcagcggguccgaccCGucCCGGGCcacGUGCcccGCCCGGu -3'
miRNA:   3'- -GACGCU--------------GCu-GGCCCGu--CACG---UGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 42691 0.66 0.434608
Target:  5'- cCUGUGGauGCCGGGC---GCgACCCGGc -3'
miRNA:   3'- -GACGCUgcUGGCCCGucaCG-UGGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.