miRNA display CGI


Results 101 - 115 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26260 5' -60.8 NC_005345.2 + 42951 0.69 0.281047
Target:  5'- -cGCGGacgGGCCGGGCGGcacgcGCACgaaCCGGg -3'
miRNA:   3'- gaCGCUg--CUGGCCCGUCa----CGUG---GGCC- -5'
26260 5' -60.8 NC_005345.2 + 43484 0.67 0.351128
Target:  5'- -cGCGGuCGgcucgguccgggcccGCCGGGCGGUGCcgaUCGGg -3'
miRNA:   3'- gaCGCU-GC---------------UGGCCCGUCACGug-GGCC- -5'
26260 5' -60.8 NC_005345.2 + 43792 0.71 0.192839
Target:  5'- cCUGgaGAUcGCCGGGCAGcGCGCCCa- -3'
miRNA:   3'- -GACg-CUGcUGGCCCGUCaCGUGGGcc -5'
26260 5' -60.8 NC_005345.2 + 44496 0.74 0.11978
Target:  5'- -gGCGACGGCCGaGGCAcaGCaggcgacgGCCCGGa -3'
miRNA:   3'- gaCGCUGCUGGC-CCGUcaCG--------UGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 45156 0.66 0.416275
Target:  5'- gCUGCGGCucguccGACCGGGCcucgacGUcGCAgCCGa -3'
miRNA:   3'- -GACGCUG------CUGGCCCGu-----CA-CGUgGGCc -5'
26260 5' -60.8 NC_005345.2 + 45467 0.68 0.332116
Target:  5'- -aGaCGGCGGCCGGGguGgGCAUgUCGGc -3'
miRNA:   3'- gaC-GCUGCUGGCCCguCaCGUG-GGCC- -5'
26260 5' -60.8 NC_005345.2 + 45539 0.65 0.449606
Target:  5'- aCUGCGcgagcagggcgacaGCGGCCgaggucgGGGCGGgccgguUGCGgCCGGg -3'
miRNA:   3'- -GACGC--------------UGCUGG-------CCCGUC------ACGUgGGCC- -5'
26260 5' -60.8 NC_005345.2 + 45663 1.1 0.000247
Target:  5'- cCUGCGACGACCGGGCAGUGCACCCGGa -3'
miRNA:   3'- -GACGCUGCUGGCCCGUCACGUGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 45854 0.69 0.287943
Target:  5'- -gGCGACGAUCguggGGGCGGggaGCCCGa -3'
miRNA:   3'- gaCGCUGCUGG----CCCGUCacgUGGGCc -5'
26260 5' -60.8 NC_005345.2 + 46150 0.67 0.364227
Target:  5'- -cGCGGUGgguuccACCGGGCAGcccuccUGCACCCa- -3'
miRNA:   3'- gaCGCUGC------UGGCCCGUC------ACGUGGGcc -5'
26260 5' -60.8 NC_005345.2 + 46689 0.68 0.30943
Target:  5'- -cGCGcAgGACUGGGCAG-GCcuACaCCGGg -3'
miRNA:   3'- gaCGC-UgCUGGCCCGUCaCG--UG-GGCC- -5'
26260 5' -60.8 NC_005345.2 + 46786 0.66 0.407288
Target:  5'- -cGCGaggucGCGACCGGGC--UGCGCCgccaagcacgcuCGGa -3'
miRNA:   3'- gaCGC-----UGCUGGCCCGucACGUGG------------GCC- -5'
26260 5' -60.8 NC_005345.2 + 47102 0.66 0.425383
Target:  5'- -cGCGGCccGCCGGGCc--GCGCCgGGc -3'
miRNA:   3'- gaCGCUGc-UGGCCCGucaCGUGGgCC- -5'
26260 5' -60.8 NC_005345.2 + 48335 0.72 0.178402
Target:  5'- gUGUGACGGCCcccGGGCgagcaGGUGUaagcggGCCCGGu -3'
miRNA:   3'- gACGCUGCUGG---CCCG-----UCACG------UGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 48898 0.69 0.261144
Target:  5'- -gGCGAgGugCGGGCGGcgaugGCuCCCGa -3'
miRNA:   3'- gaCGCUgCugGCCCGUCa----CGuGGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.