miRNA display CGI


Results 41 - 60 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26260 5' -60.8 NC_005345.2 + 33191 0.69 0.294972
Target:  5'- -gGCGACGAUcgCGGGCAGcGUGCUCa- -3'
miRNA:   3'- gaCGCUGCUG--GCCCGUCaCGUGGGcc -5'
26260 5' -60.8 NC_005345.2 + 33017 0.67 0.381069
Target:  5'- -cGuCGACGAUCGGGCucggccgcggGGUGCgguCCGGc -3'
miRNA:   3'- gaC-GCUGCUGGCCCG----------UCACGug-GGCC- -5'
26260 5' -60.8 NC_005345.2 + 31954 0.67 0.372583
Target:  5'- gUGCGG-GugCGGGUgcgGGUGCGgCUGGu -3'
miRNA:   3'- gACGCUgCugGCCCG---UCACGUgGGCC- -5'
26260 5' -60.8 NC_005345.2 + 31861 0.66 0.443948
Target:  5'- cCUGCGGCGAacgugggcaCGGGUucgGGUGCGgugagUUCGGg -3'
miRNA:   3'- -GACGCUGCUg--------GCCCG---UCACGU-----GGGCC- -5'
26260 5' -60.8 NC_005345.2 + 31721 0.71 0.219176
Target:  5'- gUGCG-CgGACgGGGUucgGGUGCACCuCGGg -3'
miRNA:   3'- gACGCuG-CUGgCCCG---UCACGUGG-GCC- -5'
26260 5' -60.8 NC_005345.2 + 31320 0.78 0.063675
Target:  5'- --cCGGCGGCCGGGCGGgaagggGCACgCCGGc -3'
miRNA:   3'- gacGCUGCUGGCCCGUCa-----CGUG-GGCC- -5'
26260 5' -60.8 NC_005345.2 + 31196 0.77 0.081723
Target:  5'- -cGCGGCGGgUGcGGCGGgugcGCACCCGGg -3'
miRNA:   3'- gaCGCUGCUgGC-CCGUCa---CGUGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 31044 0.68 0.309429
Target:  5'- gUGCGGCGACgaucuuccaCGGG-GGUgcgaacccgcGCACCCGGu -3'
miRNA:   3'- gACGCUGCUG---------GCCCgUCA----------CGUGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 30919 0.68 0.32442
Target:  5'- -gGUGACGACCGccGGCggccgcucacGGUGCACggccgcgaCCGGg -3'
miRNA:   3'- gaCGCUGCUGGC--CCG----------UCACGUG--------GGCC- -5'
26260 5' -60.8 NC_005345.2 + 30586 0.69 0.294972
Target:  5'- --cCGACG-CUGGGCGc-GCACCCGGc -3'
miRNA:   3'- gacGCUGCuGGCCCGUcaCGUGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 30532 0.69 0.274282
Target:  5'- -aGCgGACGAUCGGGCAGUauGCcgagACCCu- -3'
miRNA:   3'- gaCG-CUGCUGGCCCGUCA--CG----UGGGcc -5'
26260 5' -60.8 NC_005345.2 + 30501 0.66 0.443948
Target:  5'- gCUGCcggacaGCGACCcgcGGGCgagGGUGCugCCGc -3'
miRNA:   3'- -GACGc-----UGCUGG---CCCG---UCACGugGGCc -5'
26260 5' -60.8 NC_005345.2 + 30470 0.69 0.274282
Target:  5'- gCUGCGcGCGAucugcgUCGcGGUGGUGCGCCgGGu -3'
miRNA:   3'- -GACGC-UGCU------GGC-CCGUCACGUGGgCC- -5'
26260 5' -60.8 NC_005345.2 + 30217 0.67 0.347104
Target:  5'- -gGCGACGAUCGcgcauccGGCGGUG-AgCCGGu -3'
miRNA:   3'- gaCGCUGCUGGC-------CCGUCACgUgGGCC- -5'
26260 5' -60.8 NC_005345.2 + 29870 0.73 0.155231
Target:  5'- -cGCGugGAggUGGGCgaggacggucgacaGGUGCACCCGGu -3'
miRNA:   3'- gaCGCugCUg-GCCCG--------------UCACGUGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 26612 0.68 0.332116
Target:  5'- gCUGCGGCG-CaGGcCGGUGUGCCCGa -3'
miRNA:   3'- -GACGCUGCuGgCCcGUCACGUGGGCc -5'
26260 5' -60.8 NC_005345.2 + 26487 0.68 0.316858
Target:  5'- -aGCGAcugccCGACCGuccGCAGgucgaccccuUGCACCCGGc -3'
miRNA:   3'- gaCGCU-----GCUGGCc--CGUC----------ACGUGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 25768 0.66 0.425383
Target:  5'- aUGCGGaagUCGGGCAGcucggGCGCCuCGGc -3'
miRNA:   3'- gACGCUgcuGGCCCGUCa----CGUGG-GCC- -5'
26260 5' -60.8 NC_005345.2 + 24777 0.66 0.407288
Target:  5'- gUGCGGgcgucgucCGACCucggcaaGGUGGUGCAgCCGGg -3'
miRNA:   3'- gACGCU--------GCUGGc------CCGUCACGUgGGCC- -5'
26260 5' -60.8 NC_005345.2 + 23358 0.66 0.398423
Target:  5'- gCUGCGcuGgGAgCGGGCcgAG-GCGCCCGa -3'
miRNA:   3'- -GACGC--UgCUgGCCCG--UCaCGUGGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.