miRNA display CGI


Results 61 - 80 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26260 5' -60.8 NC_005345.2 + 23297 0.67 0.375961
Target:  5'- -gGCGACGGCCGGccguuGUccucgguccgcgucgGGUGCGCgCCGa -3'
miRNA:   3'- gaCGCUGCUGGCC-----CG---------------UCACGUG-GGCc -5'
26260 5' -60.8 NC_005345.2 + 22663 0.71 0.208291
Target:  5'- cCUGCgGACGGUCGGGCAGU-CGCUCGu -3'
miRNA:   3'- -GACG-CUGCUGGCCCGUCAcGUGGGCc -5'
26260 5' -60.8 NC_005345.2 + 20991 0.68 0.301412
Target:  5'- -gGCGAggaacgcCGACCGGGCGacgcGUucGCcgGCCCGGg -3'
miRNA:   3'- gaCGCU-------GCUGGCCCGU----CA--CG--UGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 20534 0.67 0.355186
Target:  5'- cCUGCGGCGACaCGcccGGCAugcgcgauucgguGUGCGgucggucacauuCCCGGg -3'
miRNA:   3'- -GACGCUGCUG-GC---CCGU-------------CACGU------------GGGCC- -5'
26260 5' -60.8 NC_005345.2 + 20507 0.7 0.246675
Target:  5'- -aGCGGaaugccCGAccugaaaaacccuuCCGGGUAGUGCGuCCCGGc -3'
miRNA:   3'- gaCGCU------GCU--------------GGCCCGUCACGU-GGGCC- -5'
26260 5' -60.8 NC_005345.2 + 20320 0.66 0.416275
Target:  5'- -cGCGuccACGGCgaUGGGCAG-GCGCgCGGu -3'
miRNA:   3'- gaCGC---UGCUG--GCCCGUCaCGUGgGCC- -5'
26260 5' -60.8 NC_005345.2 + 20260 0.66 0.434608
Target:  5'- aUG-GACGACCucgcGCAGUgGCGCCCGu -3'
miRNA:   3'- gACgCUGCUGGcc--CGUCA-CGUGGGCc -5'
26260 5' -60.8 NC_005345.2 + 19329 0.69 0.274282
Target:  5'- -cGCGACGauGCCGGGC--UGCuCgCCGGg -3'
miRNA:   3'- gaCGCUGC--UGGCCCGucACGuG-GGCC- -5'
26260 5' -60.8 NC_005345.2 + 19253 0.67 0.389683
Target:  5'- -gGCGaccGCGACCGGGU---GCACCUGu -3'
miRNA:   3'- gaCGC---UGCUGGCCCGucaCGUGGGCc -5'
26260 5' -60.8 NC_005345.2 + 19084 0.66 0.407288
Target:  5'- -cGCGAuCGugCGGGCcGUGC-CgUGGc -3'
miRNA:   3'- gaCGCU-GCugGCCCGuCACGuGgGCC- -5'
26260 5' -60.8 NC_005345.2 + 18798 0.68 0.32442
Target:  5'- -cGCGACcGCCGGGguugcCGGgGCACuuGGg -3'
miRNA:   3'- gaCGCUGcUGGCCC-----GUCaCGUGggCC- -5'
26260 5' -60.8 NC_005345.2 + 18682 0.67 0.356001
Target:  5'- -cGCGACgcaGAUCGcGcGCAGcGUGCCCGGa -3'
miRNA:   3'- gaCGCUG---CUGGC-C-CGUCaCGUGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 18541 0.66 0.398423
Target:  5'- -gGCGGucUGAUCGGGCGGcUGCAgCUGa -3'
miRNA:   3'- gaCGCU--GCUGGCCCGUC-ACGUgGGCc -5'
26260 5' -60.8 NC_005345.2 + 17251 0.78 0.060222
Target:  5'- -cGCGucCGACCGGGCGGcagGCGCCgCGGu -3'
miRNA:   3'- gaCGCu-GCUGGCCCGUCa--CGUGG-GCC- -5'
26260 5' -60.8 NC_005345.2 + 17144 0.67 0.381069
Target:  5'- -cGCGACGuugguCgGGGCGGUcGUGCCgaCGGg -3'
miRNA:   3'- gaCGCUGCu----GgCCCGUCA-CGUGG--GCC- -5'
26260 5' -60.8 NC_005345.2 + 16872 0.67 0.389683
Target:  5'- -cGCGguACGGCCGagcguggcGGCGGaagGCGCCCGu -3'
miRNA:   3'- gaCGC--UGCUGGC--------CCGUCa--CGUGGGCc -5'
26260 5' -60.8 NC_005345.2 + 16120 0.66 0.398423
Target:  5'- -aGCaGCGGCCGGcCGGcgGCGuCCCGGc -3'
miRNA:   3'- gaCGcUGCUGGCCcGUCa-CGU-GGGCC- -5'
26260 5' -60.8 NC_005345.2 + 15654 0.71 0.192839
Target:  5'- -cGCaauGCGACCGGGCccgguGGUGaCACaCCGGg -3'
miRNA:   3'- gaCGc--UGCUGGCCCG-----UCAC-GUG-GGCC- -5'
26260 5' -60.8 NC_005345.2 + 15369 0.66 0.398423
Target:  5'- -gGCGGCGAC--GGCAGcGCggggguacuugGCCCGGg -3'
miRNA:   3'- gaCGCUGCUGgcCCGUCaCG-----------UGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 14928 0.66 0.414468
Target:  5'- -cGCGGCGGCugcagCGGGCGGcggcgaaggaucGCGCCgCGGc -3'
miRNA:   3'- gaCGCUGCUG-----GCCCGUCa-----------CGUGG-GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.