miRNA display CGI


Results 41 - 60 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26260 5' -60.8 NC_005345.2 + 42951 0.69 0.281047
Target:  5'- -cGCGGacgGGCCGGGCGGcacgcGCACgaaCCGGg -3'
miRNA:   3'- gaCGCUg--CUGGCCCGUCa----CGUG---GGCC- -5'
26260 5' -60.8 NC_005345.2 + 48335 0.72 0.178402
Target:  5'- gUGUGACGGCCcccGGGCgagcaGGUGUaagcggGCCCGGu -3'
miRNA:   3'- gACGCUGCUGG---CCCG-----UCACG------UGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 34756 0.67 0.381069
Target:  5'- -cGCGGCGGC--GGCGGUGaCGCgCGGc -3'
miRNA:   3'- gaCGCUGCUGgcCCGUCAC-GUGgGCC- -5'
26260 5' -60.8 NC_005345.2 + 10144 0.72 0.178402
Target:  5'- -gGCGGCGGCCGcucuGCGGaGCGCCCGc -3'
miRNA:   3'- gaCGCUGCUGGCc---CGUCaCGUGGGCc -5'
26260 5' -60.8 NC_005345.2 + 8737 0.66 0.443949
Target:  5'- -gGCGGCGAuCCGuacggacgcgucGGCGGUGUGgCUGGc -3'
miRNA:   3'- gaCGCUGCU-GGC------------CCGUCACGUgGGCC- -5'
26260 5' -60.8 NC_005345.2 + 43792 0.71 0.192839
Target:  5'- cCUGgaGAUcGCCGGGCAGcGCGCCCa- -3'
miRNA:   3'- -GACg-CUGcUGGCCCGUCaCGUGGGcc -5'
26260 5' -60.8 NC_005345.2 + 12614 0.71 0.203025
Target:  5'- -cGCGcuCGGCCGGGCAcGgcucggGCACCgGGc -3'
miRNA:   3'- gaCGCu-GCUGGCCCGU-Ca-----CGUGGgCC- -5'
26260 5' -60.8 NC_005345.2 + 4918 0.66 0.425383
Target:  5'- gCUGCGGCaGCC--GCAcGUGCGCuCCGGc -3'
miRNA:   3'- -GACGCUGcUGGccCGU-CACGUG-GGCC- -5'
26260 5' -60.8 NC_005345.2 + 14764 0.66 0.416275
Target:  5'- gUGCu-CGACCGGGCucgucgacUGCAacgcCCCGGu -3'
miRNA:   3'- gACGcuGCUGGCCCGuc------ACGU----GGGCC- -5'
26260 5' -60.8 NC_005345.2 + 24777 0.66 0.407288
Target:  5'- gUGCGGgcgucgucCGACCucggcaaGGUGGUGCAgCCGGg -3'
miRNA:   3'- gACGCU--------GCUGGc------CCGUCACGUgGGCC- -5'
26260 5' -60.8 NC_005345.2 + 15369 0.66 0.398423
Target:  5'- -gGCGGCGAC--GGCAGcGCggggguacuugGCCCGGg -3'
miRNA:   3'- gaCGCUGCUGgcCCGUCaCG-----------UGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 3833 0.66 0.443949
Target:  5'- gCUGCGAgGuCgGcGGC-GUGCggACCCGGc -3'
miRNA:   3'- -GACGCUgCuGgC-CCGuCACG--UGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 4284 0.67 0.364227
Target:  5'- -cGCGACGcgGCCGccGCGGgGCGCCuCGGa -3'
miRNA:   3'- gaCGCUGC--UGGCc-CGUCaCGUGG-GCC- -5'
26260 5' -60.8 NC_005345.2 + 383 0.67 0.347907
Target:  5'- -cGUGGCGAacaCGuGGCGaaggucGUGCACCCGcGg -3'
miRNA:   3'- gaCGCUGCUg--GC-CCGU------CACGUGGGC-C- -5'
26260 5' -60.8 NC_005345.2 + 18798 0.68 0.32442
Target:  5'- -cGCGACcGCCGGGguugcCGGgGCACuuGGg -3'
miRNA:   3'- gaCGCUGcUGGCCC-----GUCaCGUGggCC- -5'
26260 5' -60.8 NC_005345.2 + 46689 0.68 0.30943
Target:  5'- -cGCGcAgGACUGGGCAG-GCcuACaCCGGg -3'
miRNA:   3'- gaCGC-UgCUGGCCCGUCaCG--UG-GGCC- -5'
26260 5' -60.8 NC_005345.2 + 30470 0.69 0.274282
Target:  5'- gCUGCGcGCGAucugcgUCGcGGUGGUGCGCCgGGu -3'
miRNA:   3'- -GACGC-UGCU------GGC-CCGUCACGUGGgCC- -5'
26260 5' -60.8 NC_005345.2 + 36609 0.7 0.25477
Target:  5'- aUGCagauGGCGGCCGGGCucGUGCcgcuGCgCGGg -3'
miRNA:   3'- gACG----CUGCUGGCCCGu-CACG----UGgGCC- -5'
26260 5' -60.8 NC_005345.2 + 42691 0.66 0.434608
Target:  5'- cCUGUGGauGCCGGGC---GCgACCCGGc -3'
miRNA:   3'- -GACGCUgcUGGCCCGucaCG-UGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 26487 0.68 0.316858
Target:  5'- -aGCGAcugccCGACCGuccGCAGgucgaccccuUGCACCCGGc -3'
miRNA:   3'- gaCGCU-----GCUGGCc--CGUC----------ACGUGGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.