miRNA display CGI


Results 61 - 80 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26260 5' -60.8 NC_005345.2 + 36830 0.67 0.347907
Target:  5'- -aGgGACGACCGaucGGCGccGcGCACUCGGg -3'
miRNA:   3'- gaCgCUGCUGGC---CCGU--CaCGUGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 30217 0.67 0.347104
Target:  5'- -gGCGACGAUCGcgcauccGGCGGUG-AgCCGGu -3'
miRNA:   3'- gaCGCUGCUGGC-------CCGUCACgUgGGCC- -5'
26260 5' -60.8 NC_005345.2 + 45467 0.68 0.332116
Target:  5'- -aGaCGGCGGCCGGGguGgGCAUgUCGGc -3'
miRNA:   3'- gaC-GCUGCUGGCCCguCaCGUG-GGCC- -5'
26260 5' -60.8 NC_005345.2 + 17251 0.78 0.060222
Target:  5'- -cGCGucCGACCGGGCGGcagGCGCCgCGGu -3'
miRNA:   3'- gaCGCu-GCUGGCCCGUCa--CGUGG-GCC- -5'
26260 5' -60.8 NC_005345.2 + 47102 0.66 0.425383
Target:  5'- -cGCGGCccGCCGGGCc--GCGCCgGGc -3'
miRNA:   3'- gaCGCUGc-UGGCCCGucaCGUGGgCC- -5'
26260 5' -60.8 NC_005345.2 + 34582 0.68 0.316858
Target:  5'- gUGCcgacACGGCCGGGCccGUGCcguaCCGGg -3'
miRNA:   3'- gACGc---UGCUGGCCCGu-CACGug--GGCC- -5'
26260 5' -60.8 NC_005345.2 + 34157 0.66 0.407287
Target:  5'- -gGCGGCGGCCccgaGG-AGUG-GCCCGGg -3'
miRNA:   3'- gaCGCUGCUGGc---CCgUCACgUGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 18541 0.66 0.398423
Target:  5'- -gGCGGucUGAUCGGGCGGcUGCAgCUGa -3'
miRNA:   3'- gaCGCU--GCUGGCCCGUC-ACGUgGGCc -5'
26260 5' -60.8 NC_005345.2 + 40056 0.82 0.035302
Target:  5'- -cGCGACGugCGGGCGGUcGCcggcgacggcgGCCCGGa -3'
miRNA:   3'- gaCGCUGCugGCCCGUCA-CG-----------UGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 45663 1.1 0.000247
Target:  5'- cCUGCGACGACCGGGCAGUGCACCCGGa -3'
miRNA:   3'- -GACGCUGCUGGCCCGUCACGUGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 18682 0.67 0.356001
Target:  5'- -cGCGACgcaGAUCGcGcGCAGcGUGCCCGGa -3'
miRNA:   3'- gaCGCUG---CUGGC-C-CGUCaCGUGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 31320 0.78 0.063675
Target:  5'- --cCGGCGGCCGGGCGGgaagggGCACgCCGGc -3'
miRNA:   3'- gacGCUGCUGGCCCGUCa-----CGUG-GGCC- -5'
26260 5' -60.8 NC_005345.2 + 31196 0.77 0.081723
Target:  5'- -cGCGGCGGgUGcGGCGGgugcGCACCCGGg -3'
miRNA:   3'- gaCGCUGCUgGC-CCGUCa---CGUGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 9628 0.75 0.116587
Target:  5'- cCUGCucGAuCGGCCGGGUccacucGG-GCACCCGGg -3'
miRNA:   3'- -GACG--CU-GCUGGCCCG------UCaCGUGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 29870 0.73 0.155231
Target:  5'- -cGCGugGAggUGGGCgaggacggucgacaGGUGCACCCGGu -3'
miRNA:   3'- gaCGCugCUg-GCCCG--------------UCACGUGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 41037 0.73 0.156053
Target:  5'- -cGaCGGCGGCCGGGUcggucuugcggaAGUGCucuugcaGCCCGGc -3'
miRNA:   3'- gaC-GCUGCUGGCCCG------------UCACG-------UGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 43484 0.67 0.351128
Target:  5'- -cGCGGuCGgcucgguccgggcccGCCGGGCGGUGCcgaUCGGg -3'
miRNA:   3'- gaCGCU-GC---------------UGGCCCGUCACGug-GGCC- -5'
26260 5' -60.8 NC_005345.2 + 34627 0.8 0.049506
Target:  5'- gUGCGGCGGuCgGGGCGGUGCGcugcuCCCGGu -3'
miRNA:   3'- gACGCUGCU-GgCCCGUCACGU-----GGGCC- -5'
26260 5' -60.8 NC_005345.2 + 39983 0.67 0.347907
Target:  5'- -cGCacACGACCGGcCcGUGCACCCGc -3'
miRNA:   3'- gaCGc-UGCUGGCCcGuCACGUGGGCc -5'
26260 5' -60.8 NC_005345.2 + 7498 0.66 0.398423
Target:  5'- -aGUGGCgGGCCgccauucgguGGGC-GUGCugCCGGc -3'
miRNA:   3'- gaCGCUG-CUGG----------CCCGuCACGugGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.