miRNA display CGI


Results 81 - 100 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26260 5' -60.8 NC_005345.2 + 45467 0.68 0.332116
Target:  5'- -aGaCGGCGGCCGGGguGgGCAUgUCGGc -3'
miRNA:   3'- gaC-GCUGCUGGCCCguCaCGUG-GGCC- -5'
26260 5' -60.8 NC_005345.2 + 34582 0.68 0.316858
Target:  5'- gUGCcgacACGGCCGGGCccGUGCcguaCCGGg -3'
miRNA:   3'- gACGc---UGCUGGCCCGu-CACGug--GGCC- -5'
26260 5' -60.8 NC_005345.2 + 41037 0.73 0.156053
Target:  5'- -cGaCGGCGGCCGGGUcggucuugcggaAGUGCucuugcaGCCCGGc -3'
miRNA:   3'- gaC-GCUGCUGGCCCG------------UCACG-------UGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 29870 0.73 0.155231
Target:  5'- -cGCGugGAggUGGGCgaggacggucgacaGGUGCACCCGGu -3'
miRNA:   3'- gaCGCugCUg-GCCCG--------------UCACGUGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 9628 0.75 0.116587
Target:  5'- cCUGCucGAuCGGCCGGGUccacucGG-GCACCCGGg -3'
miRNA:   3'- -GACG--CU-GCUGGCCCG------UCaCGUGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 31196 0.77 0.081723
Target:  5'- -cGCGGCGGgUGcGGCGGgugcGCACCCGGg -3'
miRNA:   3'- gaCGCUGCUgGC-CCGUCa---CGUGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 31320 0.78 0.063675
Target:  5'- --cCGGCGGCCGGGCGGgaagggGCACgCCGGc -3'
miRNA:   3'- gacGCUGCUGGCCCGUCa-----CGUG-GGCC- -5'
26260 5' -60.8 NC_005345.2 + 17251 0.78 0.060222
Target:  5'- -cGCGucCGACCGGGCGGcagGCGCCgCGGu -3'
miRNA:   3'- gaCGCu-GCUGGCCCGUCa--CGUGG-GCC- -5'
26260 5' -60.8 NC_005345.2 + 34627 0.8 0.049506
Target:  5'- gUGCGGCGGuCgGGGCGGUGCGcugcuCCCGGu -3'
miRNA:   3'- gACGCUGCU-GgCCCGUCACGU-----GGGCC- -5'
26260 5' -60.8 NC_005345.2 + 40056 0.82 0.035302
Target:  5'- -cGCGACGugCGGGCGGUcGCcggcgacggcgGCCCGGa -3'
miRNA:   3'- gaCGCUGCugGCCCGUCA-CG-----------UGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 36260 0.73 0.156466
Target:  5'- -cGCGGCGAUCGaGGCgAGcgGcCACCCGGc -3'
miRNA:   3'- gaCGCUGCUGGC-CCG-UCa-C-GUGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 31721 0.71 0.219176
Target:  5'- gUGCG-CgGACgGGGUucgGGUGCACCuCGGg -3'
miRNA:   3'- gACGCuG-CUGgCCCG---UCACGUGG-GCC- -5'
26260 5' -60.8 NC_005345.2 + 26487 0.68 0.316858
Target:  5'- -aGCGAcugccCGACCGuccGCAGgucgaccccuUGCACCCGGc -3'
miRNA:   3'- gaCGCU-----GCUGGCc--CGUC----------ACGUGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 30586 0.69 0.294972
Target:  5'- --cCGACG-CUGGGCGc-GCACCCGGc -3'
miRNA:   3'- gacGCUGCuGGCCCGUcaCGUGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 45854 0.69 0.287943
Target:  5'- -gGCGACGAUCguggGGGCGGggaGCCCGa -3'
miRNA:   3'- gaCGCUGCUGG----CCCGUCacgUGGGCc -5'
26260 5' -60.8 NC_005345.2 + 19329 0.69 0.274282
Target:  5'- -cGCGACGauGCCGGGC--UGCuCgCCGGg -3'
miRNA:   3'- gaCGCUGC--UGGCCCGucACGuG-GGCC- -5'
26260 5' -60.8 NC_005345.2 + 48898 0.69 0.261144
Target:  5'- -gGCGAgGugCGGGCGGcgaugGCuCCCGa -3'
miRNA:   3'- gaCGCUgCugGCCCGUCa----CGuGGGCc -5'
26260 5' -60.8 NC_005345.2 + 20507 0.7 0.246675
Target:  5'- -aGCGGaaugccCGAccugaaaaacccuuCCGGGUAGUGCGuCCCGGc -3'
miRNA:   3'- gaCGCU------GCU--------------GGCCCGUCACGU-GGGCC- -5'
26260 5' -60.8 NC_005345.2 + 1179 0.7 0.242405
Target:  5'- -cGCGGCGcACaCGGGCGGcucgGCAgUCCGGc -3'
miRNA:   3'- gaCGCUGC-UG-GCCCGUCa---CGU-GGGCC- -5'
26260 5' -60.8 NC_005345.2 + 37920 0.7 0.236412
Target:  5'- gCUGCGGCaGCgCGGGCAGUcauGCccauGCCCGu -3'
miRNA:   3'- -GACGCUGcUG-GCCCGUCA---CG----UGGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.