miRNA display CGI


Results 41 - 60 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26260 5' -60.8 NC_005345.2 + 45539 0.65 0.449606
Target:  5'- aCUGCGcgagcagggcgacaGCGGCCgaggucgGGGCGGgccgguUGCGgCCGGg -3'
miRNA:   3'- -GACGC--------------UGCUGG-------CCCGUC------ACGUgGGCC- -5'
26260 5' -60.8 NC_005345.2 + 34157 0.66 0.407287
Target:  5'- -gGCGGCGGCCccgaGG-AGUG-GCCCGGg -3'
miRNA:   3'- gaCGCUGCUGGc---CCgUCACgUGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 18541 0.66 0.398423
Target:  5'- -gGCGGucUGAUCGGGCGGcUGCAgCUGa -3'
miRNA:   3'- gaCGCU--GCUGGCCCGUC-ACGUgGGCc -5'
26260 5' -60.8 NC_005345.2 + 7498 0.66 0.398423
Target:  5'- -aGUGGCgGGCCgccauucgguGGGC-GUGCugCCGGc -3'
miRNA:   3'- gaCGCUG-CUGG----------CCCGuCACGugGGCC- -5'
26260 5' -60.8 NC_005345.2 + 36830 0.67 0.347907
Target:  5'- -aGgGACGACCGaucGGCGccGcGCACUCGGg -3'
miRNA:   3'- gaCgCUGCUGGC---CCGU--CaCGUGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 39983 0.67 0.347907
Target:  5'- -cGCacACGACCGGcCcGUGCACCCGc -3'
miRNA:   3'- gaCGc-UGCUGGCCcGuCACGUGGGCc -5'
26260 5' -60.8 NC_005345.2 + 43484 0.67 0.351128
Target:  5'- -cGCGGuCGgcucgguccgggcccGCCGGGCGGUGCcgaUCGGg -3'
miRNA:   3'- gaCGCU-GC---------------UGGCCCGUCACGug-GGCC- -5'
26260 5' -60.8 NC_005345.2 + 18682 0.67 0.356001
Target:  5'- -cGCGACgcaGAUCGcGcGCAGcGUGCCCGGa -3'
miRNA:   3'- gaCGCUG---CUGGC-C-CGUCaCGUGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 3430 0.67 0.356001
Target:  5'- -cGCGGCGG-CGGGCGGcgaUGCGggcCCCGa -3'
miRNA:   3'- gaCGCUGCUgGCCCGUC---ACGU---GGGCc -5'
26260 5' -60.8 NC_005345.2 + 8317 0.67 0.356818
Target:  5'- -gGCGGCGcgcagcagcagcguuCCGgcGGCGGUGCAcgcCCCGGu -3'
miRNA:   3'- gaCGCUGCu--------------GGC--CCGUCACGU---GGGCC- -5'
26260 5' -60.8 NC_005345.2 + 46150 0.67 0.364227
Target:  5'- -cGCGGUGgguuccACCGGGCAGcccuccUGCACCCa- -3'
miRNA:   3'- gaCGCUGC------UGGCCCGUC------ACGUGGGcc -5'
26260 5' -60.8 NC_005345.2 + 16120 0.66 0.398423
Target:  5'- -aGCaGCGGCCGGcCGGcgGCGuCCCGGc -3'
miRNA:   3'- gaCGcUGCUGGCCcGUCa-CGU-GGGCC- -5'
26260 5' -60.8 NC_005345.2 + 17144 0.67 0.381069
Target:  5'- -cGCGACGuugguCgGGGCGGUcGUGCCgaCGGg -3'
miRNA:   3'- gaCGCUGCu----GgCCCGUCA-CGUGG--GCC- -5'
26260 5' -60.8 NC_005345.2 + 33017 0.67 0.381069
Target:  5'- -cGuCGACGAUCGGGCucggccgcggGGUGCgguCCGGc -3'
miRNA:   3'- gaC-GCUGCUGGCCCG----------UCACGug-GGCC- -5'
26260 5' -60.8 NC_005345.2 + 23297 0.67 0.375961
Target:  5'- -gGCGACGGCCGGccguuGUccucgguccgcgucgGGUGCGCgCCGa -3'
miRNA:   3'- gaCGCUGCUGGCC-----CG---------------UCACGUG-GGCc -5'
26260 5' -60.8 NC_005345.2 + 31954 0.67 0.372583
Target:  5'- gUGCGG-GugCGGGUgcgGGUGCGgCUGGu -3'
miRNA:   3'- gACGCUgCugGCCCG---UCACGUgGGCC- -5'
26260 5' -60.8 NC_005345.2 + 8737 0.66 0.443949
Target:  5'- -gGCGGCGAuCCGuacggacgcgucGGCGGUGUGgCUGGc -3'
miRNA:   3'- gaCGCUGCU-GGC------------CCGUCACGUgGGCC- -5'
26260 5' -60.8 NC_005345.2 + 7114 0.75 0.105738
Target:  5'- -cGCGACGuguggcgccgcgcgaACCGGGCGGgGCacgugGCCCGGg -3'
miRNA:   3'- gaCGCUGC---------------UGGCCCGUCaCG-----UGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 44496 0.74 0.11978
Target:  5'- -gGCGACGGCCGaGGCAcaGCaggcgacgGCCCGGa -3'
miRNA:   3'- gaCGCUGCUGGC-CCGUcaCG--------UGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 13034 0.74 0.129506
Target:  5'- aCUGCGGCGACCGgaucaccGGCAGcgGCAUcguguggaCCGGa -3'
miRNA:   3'- -GACGCUGCUGGC-------CCGUCa-CGUG--------GGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.