miRNA display CGI


Results 101 - 115 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26260 5' -60.8 NC_005345.2 + 22663 0.71 0.208291
Target:  5'- cCUGCgGACGGUCGGGCAGU-CGCUCGu -3'
miRNA:   3'- -GACG-CUGCUGGCCCGUCAcGUGGGCc -5'
26260 5' -60.8 NC_005345.2 + 40502 0.7 0.242405
Target:  5'- -cGCGACGAUCGGcGCcgaGGUGUACugcgacgccgCCGGa -3'
miRNA:   3'- gaCGCUGCUGGCC-CG---UCACGUG----------GGCC- -5'
26260 5' -60.8 NC_005345.2 + 18798 0.68 0.32442
Target:  5'- -cGCGACcGCCGGGguugcCGGgGCACuuGGg -3'
miRNA:   3'- gaCGCUGcUGGCCC-----GUCaCGUGggCC- -5'
26260 5' -60.8 NC_005345.2 + 30919 0.68 0.32442
Target:  5'- -gGUGACGACCGccGGCggccgcucacGGUGCACggccgcgaCCGGg -3'
miRNA:   3'- gaCGCUGCUGGC--CCG----------UCACGUG--------GGCC- -5'
26260 5' -60.8 NC_005345.2 + 6640 0.68 0.316858
Target:  5'- gUGCGACGgcgucACCGaGCAGcUG-ACCCGGa -3'
miRNA:   3'- gACGCUGC-----UGGCcCGUC-ACgUGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 46689 0.68 0.30943
Target:  5'- -cGCGcAgGACUGGGCAG-GCcuACaCCGGg -3'
miRNA:   3'- gaCGC-UgCUGGCCCGUCaCG--UG-GGCC- -5'
26260 5' -60.8 NC_005345.2 + 9359 0.69 0.294973
Target:  5'- gCUGCgGGCGGCCGGGCucgaccacuacGG-GCAgCCGc -3'
miRNA:   3'- -GACG-CUGCUGGCCCG-----------UCaCGUgGGCc -5'
26260 5' -60.8 NC_005345.2 + 42951 0.69 0.281047
Target:  5'- -cGCGGacgGGCCGGGCGGcacgcGCACgaaCCGGg -3'
miRNA:   3'- gaCGCUg--CUGGCCCGUCa----CGUG---GGCC- -5'
26260 5' -60.8 NC_005345.2 + 33900 0.69 0.274282
Target:  5'- -cGCG-CGGCCGGGCAGcUG-AUCCGu -3'
miRNA:   3'- gaCGCuGCUGGCCCGUC-ACgUGGGCc -5'
26260 5' -60.8 NC_005345.2 + 30532 0.69 0.274282
Target:  5'- -aGCgGACGAUCGGGCAGUauGCcgagACCCu- -3'
miRNA:   3'- gaCG-CUGCUGGCCCGUCA--CG----UGGGcc -5'
26260 5' -60.8 NC_005345.2 + 30470 0.69 0.274282
Target:  5'- gCUGCGcGCGAucugcgUCGcGGUGGUGCGCCgGGu -3'
miRNA:   3'- -GACGC-UGCU------GGC-CCGUCACGUGGgCC- -5'
26260 5' -60.8 NC_005345.2 + 646 0.69 0.267648
Target:  5'- cCUGCGGCguGAgCGGGaCcGUGCggaACCCGGc -3'
miRNA:   3'- -GACGCUG--CUgGCCC-GuCACG---UGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 5310 0.69 0.259219
Target:  5'- --cCGuCGACCGGGCAGUacGUgaucagccugaucgACCCGGa -3'
miRNA:   3'- gacGCuGCUGGCCCGUCA--CG--------------UGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 36609 0.7 0.25477
Target:  5'- aUGCagauGGCGGCCGGGCucGUGCcgcuGCgCGGg -3'
miRNA:   3'- gACG----CUGCUGGCCCGu-CACG----UGgGCC- -5'
26260 5' -60.8 NC_005345.2 + 6609 0.77 0.079498
Target:  5'- -aGCuGugGACCGgcGGCGGuUGCGCCCGGc -3'
miRNA:   3'- gaCG-CugCUGGC--CCGUC-ACGUGGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.