Results 21 - 40 of 115 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26260 | 5' | -60.8 | NC_005345.2 | + | 14764 | 0.66 | 0.416275 |
Target: 5'- gUGCu-CGACCGGGCucgucgacUGCAacgcCCCGGu -3' miRNA: 3'- gACGcuGCUGGCCCGuc------ACGU----GGGCC- -5' |
|||||||
26260 | 5' | -60.8 | NC_005345.2 | + | 36784 | 0.66 | 0.416275 |
Target: 5'- gCUGCGagGCG-UCGGGCcccGUGCAgCCGa -3' miRNA: 3'- -GACGC--UGCuGGCCCGu--CACGUgGGCc -5' |
|||||||
26260 | 5' | -60.8 | NC_005345.2 | + | 20320 | 0.66 | 0.416275 |
Target: 5'- -cGCGuccACGGCgaUGGGCAG-GCGCgCGGu -3' miRNA: 3'- gaCGC---UGCUG--GCCCGUCaCGUGgGCC- -5' |
|||||||
26260 | 5' | -60.8 | NC_005345.2 | + | 14928 | 0.66 | 0.414468 |
Target: 5'- -cGCGGCGGCugcagCGGGCGGcggcgaaggaucGCGCCgCGGc -3' miRNA: 3'- gaCGCUGCUG-----GCCCGUCa-----------CGUGG-GCC- -5' |
|||||||
26260 | 5' | -60.8 | NC_005345.2 | + | 46786 | 0.66 | 0.407288 |
Target: 5'- -cGCGaggucGCGACCGGGC--UGCGCCgccaagcacgcuCGGa -3' miRNA: 3'- gaCGC-----UGCUGGCCCGucACGUGG------------GCC- -5' |
|||||||
26260 | 5' | -60.8 | NC_005345.2 | + | 19084 | 0.66 | 0.407288 |
Target: 5'- -cGCGAuCGugCGGGCcGUGC-CgUGGc -3' miRNA: 3'- gaCGCU-GCugGCCCGuCACGuGgGCC- -5' |
|||||||
26260 | 5' | -60.8 | NC_005345.2 | + | 24777 | 0.66 | 0.407288 |
Target: 5'- gUGCGGgcgucgucCGACCucggcaaGGUGGUGCAgCCGGg -3' miRNA: 3'- gACGCU--------GCUGGc------CCGUCACGUgGGCC- -5' |
|||||||
26260 | 5' | -60.8 | NC_005345.2 | + | 14630 | 0.66 | 0.407287 |
Target: 5'- -cGCGAgGACCGGGa---GCACCucgCGGu -3' miRNA: 3'- gaCGCUgCUGGCCCgucaCGUGG---GCC- -5' |
|||||||
26260 | 5' | -60.8 | NC_005345.2 | + | 34157 | 0.66 | 0.407287 |
Target: 5'- -gGCGGCGGCCccgaGG-AGUG-GCCCGGg -3' miRNA: 3'- gaCGCUGCUGGc---CCgUCACgUGGGCC- -5' |
|||||||
26260 | 5' | -60.8 | NC_005345.2 | + | 8082 | 0.66 | 0.401954 |
Target: 5'- -aGCaGGCGGCCGGGCugcaAGaGCacuuccgcaagaccgACCCGGc -3' miRNA: 3'- gaCG-CUGCUGGCCCG----UCaCG---------------UGGGCC- -5' |
|||||||
26260 | 5' | -60.8 | NC_005345.2 | + | 16120 | 0.66 | 0.398423 |
Target: 5'- -aGCaGCGGCCGGcCGGcgGCGuCCCGGc -3' miRNA: 3'- gaCGcUGCUGGCCcGUCa-CGU-GGGCC- -5' |
|||||||
26260 | 5' | -60.8 | NC_005345.2 | + | 23358 | 0.66 | 0.398423 |
Target: 5'- gCUGCGcuGgGAgCGGGCcgAG-GCGCCCGa -3' miRNA: 3'- -GACGC--UgCUgGCCCG--UCaCGUGGGCc -5' |
|||||||
26260 | 5' | -60.8 | NC_005345.2 | + | 15369 | 0.66 | 0.398423 |
Target: 5'- -gGCGGCGAC--GGCAGcGCggggguacuugGCCCGGg -3' miRNA: 3'- gaCGCUGCUGgcCCGUCaCG-----------UGGGCC- -5' |
|||||||
26260 | 5' | -60.8 | NC_005345.2 | + | 18541 | 0.66 | 0.398423 |
Target: 5'- -gGCGGucUGAUCGGGCGGcUGCAgCUGa -3' miRNA: 3'- gaCGCU--GCUGGCCCGUC-ACGUgGGCc -5' |
|||||||
26260 | 5' | -60.8 | NC_005345.2 | + | 7498 | 0.66 | 0.398423 |
Target: 5'- -aGUGGCgGGCCgccauucgguGGGC-GUGCugCCGGc -3' miRNA: 3'- gaCGCUG-CUGG----------CCCGuCACGugGGCC- -5' |
|||||||
26260 | 5' | -60.8 | NC_005345.2 | + | 16872 | 0.67 | 0.389683 |
Target: 5'- -cGCGguACGGCCGagcguggcGGCGGaagGCGCCCGu -3' miRNA: 3'- gaCGC--UGCUGGC--------CCGUCa--CGUGGGCc -5' |
|||||||
26260 | 5' | -60.8 | NC_005345.2 | + | 19253 | 0.67 | 0.389683 |
Target: 5'- -gGCGaccGCGACCGGGU---GCACCUGu -3' miRNA: 3'- gaCGC---UGCUGGCCCGucaCGUGGGCc -5' |
|||||||
26260 | 5' | -60.8 | NC_005345.2 | + | 33017 | 0.67 | 0.381069 |
Target: 5'- -cGuCGACGAUCGGGCucggccgcggGGUGCgguCCGGc -3' miRNA: 3'- gaC-GCUGCUGGCCCG----------UCACGug-GGCC- -5' |
|||||||
26260 | 5' | -60.8 | NC_005345.2 | + | 17144 | 0.67 | 0.381069 |
Target: 5'- -cGCGACGuugguCgGGGCGGUcGUGCCgaCGGg -3' miRNA: 3'- gaCGCUGCu----GgCCCGUCA-CGUGG--GCC- -5' |
|||||||
26260 | 5' | -60.8 | NC_005345.2 | + | 34756 | 0.67 | 0.381069 |
Target: 5'- -cGCGGCGGC--GGCGGUGaCGCgCGGc -3' miRNA: 3'- gaCGCUGCUGgcCCGUCAC-GUGgGCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home