miRNA display CGI


Results 41 - 60 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26261 3' -57.3 NC_005345.2 + 15963 0.67 0.522627
Target:  5'- cGUUCGGCGcuGCcaGUUGGCgaugugCGCGGCGu -3'
miRNA:   3'- -CGAGCCGCu-CG--UAGCUGa-----GCGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 37725 0.67 0.515369
Target:  5'- cGCUgCGGCGcggcgccggcuggucGGCGUCGucgaggucgagcuGCUCGCccgcaGGCGGc -3'
miRNA:   3'- -CGA-GCCGC---------------UCGUAGC-------------UGAGCG-----UCGCC- -5'
26261 3' -57.3 NC_005345.2 + 18027 0.67 0.512271
Target:  5'- cGC-CgGGCGAGCGcaggaacgCGGCcacgUUGCGGCGGg -3'
miRNA:   3'- -CGaG-CCGCUCGUa-------GCUG----AGCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 38319 0.67 0.512271
Target:  5'- aGCUCGGCGccGGC-UCGugUCuGCcGCaGGc -3'
miRNA:   3'- -CGAGCCGC--UCGuAGCugAG-CGuCG-CC- -5'
26261 3' -57.3 NC_005345.2 + 37866 0.68 0.502
Target:  5'- gGC-CGGCGAgGCucaGGCccggacggUCGCGGCGGu -3'
miRNA:   3'- -CGaGCCGCU-CGuagCUG--------AGCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 14907 0.68 0.491821
Target:  5'- aGCgggCGaaGCGGGCcgCGGCgcggcggcUGCAGCGGg -3'
miRNA:   3'- -CGa--GC--CGCUCGuaGCUGa-------GCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 4360 0.68 0.481738
Target:  5'- cCUCgGGCGGGCGggCcGCUCGguGgGGg -3'
miRNA:   3'- cGAG-CCGCUCGUa-GcUGAGCguCgCC- -5'
26261 3' -57.3 NC_005345.2 + 41087 0.68 0.481738
Target:  5'- uGCUCGGCG-GCGagcUUGAUcUGCAGCu- -3'
miRNA:   3'- -CGAGCCGCuCGU---AGCUGaGCGUCGcc -5'
26261 3' -57.3 NC_005345.2 + 36665 0.68 0.481738
Target:  5'- aCUCGGCGAGCuccgCGAgaUCGUcGCGc -3'
miRNA:   3'- cGAGCCGCUCGua--GCUg-AGCGuCGCc -5'
26261 3' -57.3 NC_005345.2 + 36777 0.68 0.491821
Target:  5'- gGgUCGGCGucGGCgAUCGGCacagcCGCAGCGc -3'
miRNA:   3'- -CgAGCCGC--UCG-UAGCUGa----GCGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 10851 0.68 0.491821
Target:  5'- aGCUgCGGUGGGCG--GACUgcCGCAcGCGGc -3'
miRNA:   3'- -CGA-GCCGCUCGUagCUGA--GCGU-CGCC- -5'
26261 3' -57.3 NC_005345.2 + 16349 0.68 0.471756
Target:  5'- -gUCGGCG-GCAUCGcgGCcggCGCcGCGGu -3'
miRNA:   3'- cgAGCCGCuCGUAGC--UGa--GCGuCGCC- -5'
26261 3' -57.3 NC_005345.2 + 14791 0.68 0.471756
Target:  5'- cGCccCGGUGcGCuUCGACgucgaGCGGCGGg -3'
miRNA:   3'- -CGa-GCCGCuCGuAGCUGag---CGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 8612 0.68 0.482741
Target:  5'- aGCUCGGCGAucacgaacguuccgGCGgcgucgcaguacaccUCGGCgccgaucgUCGCGGCGa -3'
miRNA:   3'- -CGAGCCGCU--------------CGU---------------AGCUG--------AGCGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 2355 0.68 0.485759
Target:  5'- uGCUUGGCGGcGCAgcccggucgCGAcCUCGCGggcccaaggguguucGCGGg -3'
miRNA:   3'- -CGAGCCGCU-CGUa--------GCU-GAGCGU---------------CGCC- -5'
26261 3' -57.3 NC_005345.2 + 35869 0.68 0.46188
Target:  5'- cGCacCGGCGAGCugcCGG--UGCAGCGGu -3'
miRNA:   3'- -CGa-GCCGCUCGua-GCUgaGCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 13267 0.68 0.46188
Target:  5'- --cCGGCGAGCA---GCUCGuCGGCGa -3'
miRNA:   3'- cgaGCCGCUCGUagcUGAGC-GUCGCc -5'
26261 3' -57.3 NC_005345.2 + 38043 0.68 0.471756
Target:  5'- aCUCuGUG-GCAUCGGaUCGCGGUGGc -3'
miRNA:   3'- cGAGcCGCuCGUAGCUgAGCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 22315 0.68 0.478732
Target:  5'- cGCUCGGCGcgccgggugccggcAGCAgugaugCGGCgaGCAGCGc -3'
miRNA:   3'- -CGAGCCGC--------------UCGUa-----GCUGagCGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 32516 0.68 0.481738
Target:  5'- uGC-CGGCGGGCGgccCGAUcUGC-GCGGg -3'
miRNA:   3'- -CGaGCCGCUCGUa--GCUGaGCGuCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.