miRNA display CGI


Results 61 - 80 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26261 3' -57.3 NC_005345.2 + 5596 0.68 0.452114
Target:  5'- cGgUCGGCGAGCuuGUCGGCgacgaGCucGGCGa -3'
miRNA:   3'- -CgAGCCGCUCG--UAGCUGag---CG--UCGCc -5'
26261 3' -57.3 NC_005345.2 + 36665 0.68 0.481738
Target:  5'- aCUCGGCGAGCuccgCGAgaUCGUcGCGc -3'
miRNA:   3'- cGAGCCGCUCGua--GCUg-AGCGuCGCc -5'
26261 3' -57.3 NC_005345.2 + 41087 0.68 0.481738
Target:  5'- uGCUCGGCG-GCGagcUUGAUcUGCAGCu- -3'
miRNA:   3'- -CGAGCCGCuCGU---AGCUGaGCGUCGcc -5'
26261 3' -57.3 NC_005345.2 + 4360 0.68 0.481738
Target:  5'- cCUCgGGCGGGCGggCcGCUCGguGgGGg -3'
miRNA:   3'- cGAG-CCGCUCGUa-GcUGAGCguCgCC- -5'
26261 3' -57.3 NC_005345.2 + 2900 0.68 0.471756
Target:  5'- cCUCGaCGAGCGgaUCGGCggaccggGCAGCGGc -3'
miRNA:   3'- cGAGCcGCUCGU--AGCUGag-----CGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 8612 0.68 0.482741
Target:  5'- aGCUCGGCGAucacgaacguuccgGCGgcgucgcaguacaccUCGGCgccgaucgUCGCGGCGa -3'
miRNA:   3'- -CGAGCCGCU--------------CGU---------------AGCUG--------AGCGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 2355 0.68 0.485759
Target:  5'- uGCUUGGCGGcGCAgcccggucgCGAcCUCGCGggcccaaggguguucGCGGg -3'
miRNA:   3'- -CGAGCCGCU-CGUa--------GCU-GAGCGU---------------CGCC- -5'
26261 3' -57.3 NC_005345.2 + 19414 0.68 0.500978
Target:  5'- aGCUCGGuCGGcugcgccGCGUCGG-UCGCAcCGGg -3'
miRNA:   3'- -CGAGCC-GCU-------CGUAGCUgAGCGUcGCC- -5'
26261 3' -57.3 NC_005345.2 + 22315 0.68 0.478732
Target:  5'- cGCUCGGCGcgccgggugccggcAGCAgugaugCGGCgaGCAGCGc -3'
miRNA:   3'- -CGAGCCGC--------------UCGUa-----GCUGagCGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 40207 0.68 0.502
Target:  5'- aGCUCGGC-AGCuacGUCGAgaCGguGCcGGu -3'
miRNA:   3'- -CGAGCCGcUCG---UAGCUgaGCguCG-CC- -5'
26261 3' -57.3 NC_005345.2 + 45080 0.68 0.500978
Target:  5'- gGCUCGGCGcaccgaGGCAuaccgugUCGgcGCUCGuCGGCGc -3'
miRNA:   3'- -CGAGCCGC------UCGU-------AGC--UGAGC-GUCGCc -5'
26261 3' -57.3 NC_005345.2 + 12359 0.69 0.432927
Target:  5'- -aUCGGCugcacgGGGCccgaCGcCUCGCAGCGGa -3'
miRNA:   3'- cgAGCCG------CUCGua--GCuGAGCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 25699 0.69 0.439588
Target:  5'- cGCUCGGCGugaccgguccggacGGCGaaccCGACacccgggcgUCGCGGUGGu -3'
miRNA:   3'- -CGAGCCGC--------------UCGUa---GCUG---------AGCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 43464 0.69 0.432927
Target:  5'- --gCGGCGAGUucgCGGCgcagCGCGGuCGGc -3'
miRNA:   3'- cgaGCCGCUCGua-GCUGa---GCGUC-GCC- -5'
26261 3' -57.3 NC_005345.2 + 4259 0.69 0.423513
Target:  5'- uGCUCGGCGAaCAcCGg--CGguGCGGg -3'
miRNA:   3'- -CGAGCCGCUcGUaGCugaGCguCGCC- -5'
26261 3' -57.3 NC_005345.2 + 24065 0.69 0.423513
Target:  5'- cGCguaCGGCGAGCcgAUCGgccggccguggcACUCGguGCGu -3'
miRNA:   3'- -CGa--GCCGCUCG--UAGC------------UGAGCguCGCc -5'
26261 3' -57.3 NC_005345.2 + 11662 0.69 0.423513
Target:  5'- cGCcCGGCGGGaaCGUCGuaccGCUCGCccgcgcugcaGGCGGa -3'
miRNA:   3'- -CGaGCCGCUC--GUAGC----UGAGCG----------UCGCC- -5'
26261 3' -57.3 NC_005345.2 + 32594 0.69 0.405059
Target:  5'- cGCgaCGGUGAGCAgccacccggugUGACgcaGCAGCGGc -3'
miRNA:   3'- -CGa-GCCGCUCGUa----------GCUGag-CGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 45264 0.69 0.396024
Target:  5'- --aCuGCGAGCGUCGGCggagaGCAGCGc -3'
miRNA:   3'- cgaGcCGCUCGUAGCUGag---CGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 31938 0.69 0.396024
Target:  5'- aGCUCGGCGGGUG-CGGgUgCgGguGCGGg -3'
miRNA:   3'- -CGAGCCGCUCGUaGCUgA-G-CguCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.