miRNA display CGI


Results 81 - 100 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26261 3' -57.3 NC_005345.2 + 32594 0.69 0.405059
Target:  5'- cGCgaCGGUGAGCAgccacccggugUGACgcaGCAGCGGc -3'
miRNA:   3'- -CGa-GCCGCUCGUa----------GCUGag-CGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 8734 0.69 0.405059
Target:  5'- cGCgucggUGGCGAGCG-CGACgacUGCAGCa- -3'
miRNA:   3'- -CGa----GCCGCUCGUaGCUGa--GCGUCGcc -5'
26261 3' -57.3 NC_005345.2 + 39114 0.69 0.399622
Target:  5'- cCUCGGCGAGCagcccGcaugcgcaguugaaaUCGGC-CGCGGCGa -3'
miRNA:   3'- cGAGCCGCUCG-----U---------------AGCUGaGCGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 31938 0.69 0.396024
Target:  5'- aGCUCGGCGGGUG-CGGgUgCgGguGCGGg -3'
miRNA:   3'- -CGAGCCGCUCGUaGCUgA-G-CguCGCC- -5'
26261 3' -57.3 NC_005345.2 + 45264 0.69 0.396024
Target:  5'- --aCuGCGAGCGUCGGCggagaGCAGCGc -3'
miRNA:   3'- cgaGcCGCUCGUAGCUGag---CGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 42527 0.69 0.420713
Target:  5'- gGCUCGGCaccgacaucacGAGCAucguccgacacgagUCGACgaGCAGCGa -3'
miRNA:   3'- -CGAGCCG-----------CUCGU--------------AGCUGagCGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 22247 0.7 0.378348
Target:  5'- cGgUCGGCGAGCGcCGcCU-GCAGCGc -3'
miRNA:   3'- -CgAGCCGCUCGUaGCuGAgCGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 39418 0.7 0.378348
Target:  5'- aGCgUCGGCGcGGUcgCGGCccgCGCGGCGcGg -3'
miRNA:   3'- -CG-AGCCGC-UCGuaGCUGa--GCGUCGC-C- -5'
26261 3' -57.3 NC_005345.2 + 27186 0.7 0.369712
Target:  5'- gGCaUCGGCGcgGGCcgUGAUcgGCAGCGGg -3'
miRNA:   3'- -CG-AGCCGC--UCGuaGCUGagCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 23555 0.7 0.361211
Target:  5'- uGCUCGGCGuucuucggcAGCAcCGGCa-GCuGCGGg -3'
miRNA:   3'- -CGAGCCGC---------UCGUaGCUGagCGuCGCC- -5'
26261 3' -57.3 NC_005345.2 + 44918 0.7 0.378348
Target:  5'- cGCagCGGCGAcCAUCGGCUCggcguaccGCAGCa- -3'
miRNA:   3'- -CGa-GCCGCUcGUAGCUGAG--------CGUCGcc -5'
26261 3' -57.3 NC_005345.2 + 42136 0.7 0.38712
Target:  5'- --cCGGCGAcccgGCGUCGA-UCGCAGCa- -3'
miRNA:   3'- cgaGCCGCU----CGUAGCUgAGCGUCGcc -5'
26261 3' -57.3 NC_005345.2 + 8025 0.7 0.352847
Target:  5'- aGCUCGaCGGGC-UCGACcucgCGCAGCu- -3'
miRNA:   3'- -CGAGCcGCUCGuAGCUGa---GCGUCGcc -5'
26261 3' -57.3 NC_005345.2 + 22110 0.7 0.352847
Target:  5'- gGCUCgguGGCGAGCAgcacaGACUCGUcgacGUGGu -3'
miRNA:   3'- -CGAG---CCGCUCGUag---CUGAGCGu---CGCC- -5'
26261 3' -57.3 NC_005345.2 + 6830 0.7 0.360368
Target:  5'- --aUGGCGGGCGggaUCGACaugguccUCGCGGCGa -3'
miRNA:   3'- cgaGCCGCUCGU---AGCUG-------AGCGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 15325 0.7 0.378348
Target:  5'- aGgUCGGU--GCGUCGGCcggggCGUAGCGGg -3'
miRNA:   3'- -CgAGCCGcuCGUAGCUGa----GCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 37531 0.7 0.38712
Target:  5'- uGCUCGGCGGGCugugAUCccCUCGcCGGCa- -3'
miRNA:   3'- -CGAGCCGCUCG----UAGcuGAGC-GUCGcc -5'
26261 3' -57.3 NC_005345.2 + 32805 0.7 0.38712
Target:  5'- uGCUCGGCGcguuccgcgaGGCAcUCGGgaaGCAGUGGg -3'
miRNA:   3'- -CGAGCCGC----------UCGU-AGCUgagCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 40249 0.71 0.344621
Target:  5'- --cUGGCGAGCGggGACggggCGCcGGCGGg -3'
miRNA:   3'- cgaGCCGCUCGUagCUGa---GCG-UCGCC- -5'
26261 3' -57.3 NC_005345.2 + 30676 0.71 0.344621
Target:  5'- --gCGGCGAGCAucuUCGGgUCGCGGgaccCGGu -3'
miRNA:   3'- cgaGCCGCUCGU---AGCUgAGCGUC----GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.