Results 101 - 120 of 131 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26261 | 3' | -57.3 | NC_005345.2 | + | 43850 | 0.71 | 0.336534 |
Target: 5'- uGCcCGGUcgacgGGGCGUCGGCcgggacucCGCGGCGGa -3' miRNA: 3'- -CGaGCCG-----CUCGUAGCUGa-------GCGUCGCC- -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 38403 | 0.71 | 0.320778 |
Target: 5'- gGCUCGGCGucGGCGaCGACaUCGagcGCGGc -3' miRNA: 3'- -CGAGCCGC--UCGUaGCUG-AGCgu-CGCC- -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 18935 | 0.71 | 0.305581 |
Target: 5'- cGCgUCGGCGucGaCGUUGAuCUCGUGGCGGc -3' miRNA: 3'- -CG-AGCCGCu-C-GUAGCU-GAGCGUCGCC- -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 24205 | 0.71 | 0.328586 |
Target: 5'- -gUCGGggcCGAGU-UCGAgUCGCGGCGGc -3' miRNA: 3'- cgAGCC---GCUCGuAGCUgAGCGUCGCC- -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 33115 | 0.71 | 0.328586 |
Target: 5'- cGCUCGGCGA-CAaCGACggGCuGUGGg -3' miRNA: 3'- -CGAGCCGCUcGUaGCUGagCGuCGCC- -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 37587 | 0.71 | 0.344621 |
Target: 5'- gGCUgcaGGCGGGCGacCGGCUCGCGuuGCGa -3' miRNA: 3'- -CGAg--CCGCUCGUa-GCUGAGCGU--CGCc -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 33556 | 0.71 | 0.334933 |
Target: 5'- cGCUCGGCGcaGGCcugaaaaccgGACUCGCGGCu- -3' miRNA: 3'- -CGAGCCGC--UCGuag-------CUGAGCGUCGcc -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 18153 | 0.71 | 0.328586 |
Target: 5'- --cCGGCGucggguacAGCcUCGGCUCGguGUGGg -3' miRNA: 3'- cgaGCCGC--------UCGuAGCUGAGCguCGCC- -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 33510 | 0.71 | 0.313109 |
Target: 5'- -aUCGGCGAGCAguccgGGCagGCGGCGa -3' miRNA: 3'- cgAGCCGCUCGUag---CUGagCGUCGCc -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 48563 | 0.71 | 0.313109 |
Target: 5'- gGCgUCGcggauGCGGGCGcCGaugaGCUCGCGGCGGg -3' miRNA: 3'- -CG-AGC-----CGCUCGUaGC----UGAGCGUCGCC- -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 35175 | 0.72 | 0.270021 |
Target: 5'- -gUCGGCGcucaAGCccgcguUCGACgggaUCGCAGCGGg -3' miRNA: 3'- cgAGCCGC----UCGu-----AGCUG----AGCGUCGCC- -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 44038 | 0.72 | 0.263322 |
Target: 5'- cGCcguaGGaGGGCAUCGggaugccgcGCUCGCGGCGGa -3' miRNA: 3'- -CGag--CCgCUCGUAGC---------UGAGCGUCGCC- -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 36088 | 0.72 | 0.270699 |
Target: 5'- uGCUCGGCGGGCugaaagacaagguccUCGACgcggccaagUCGCucuucGGCGGg -3' miRNA: 3'- -CGAGCCGCUCGu--------------AGCUG---------AGCG-----UCGCC- -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 29810 | 0.72 | 0.290941 |
Target: 5'- cGCUcgccccCGGCGAGCAgccCGGCaUCGUcGCGGc -3' miRNA: 3'- -CGA------GCCGCUCGUa--GCUG-AGCGuCGCC- -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 12198 | 0.72 | 0.290941 |
Target: 5'- aCUCGacgaCGAGCGagGACUCGCcGCGGu -3' miRNA: 3'- cGAGCc---GCUCGUagCUGAGCGuCGCC- -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 3430 | 0.72 | 0.290224 |
Target: 5'- cGCggCGGCGGGCggCGaugcgggccccgaGCUCGC-GCGGg -3' miRNA: 3'- -CGa-GCCGCUCGuaGC-------------UGAGCGuCGCC- -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 30226 | 0.73 | 0.237871 |
Target: 5'- cGCgcauccggCGGUGAGCcgGUCGACgaCGguGCGGg -3' miRNA: 3'- -CGa-------GCCGCUCG--UAGCUGa-GCguCGCC- -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 43297 | 0.73 | 0.225352 |
Target: 5'- cCUCGGCGAG-GUCGACgCGCcacagccggaaccAGCGGg -3' miRNA: 3'- cGAGCCGCUCgUAGCUGaGCG-------------UCGCC- -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 36339 | 0.73 | 0.231839 |
Target: 5'- gGCgaacCGGCGGGCcgagCGGCUCG-GGCGGg -3' miRNA: 3'- -CGa---GCCGCUCGua--GCUGAGCgUCGCC- -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 18903 | 0.74 | 0.208442 |
Target: 5'- uGCUCGGCG-GCcgCGAucaugucCUCGCGGCu- -3' miRNA: 3'- -CGAGCCGCuCGuaGCU-------GAGCGUCGcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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