miRNA display CGI


Results 41 - 60 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26261 3' -57.3 NC_005345.2 + 42136 0.7 0.38712
Target:  5'- --cCGGCGAcccgGCGUCGA-UCGCAGCa- -3'
miRNA:   3'- cgaGCCGCU----CGUAGCUgAGCGUCGcc -5'
26261 3' -57.3 NC_005345.2 + 15325 0.7 0.378348
Target:  5'- aGgUCGGU--GCGUCGGCcggggCGUAGCGGg -3'
miRNA:   3'- -CgAGCCGcuCGUAGCUGa----GCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 32805 0.7 0.38712
Target:  5'- uGCUCGGCGcguuccgcgaGGCAcUCGGgaaGCAGUGGg -3'
miRNA:   3'- -CGAGCCGC----------UCGU-AGCUgagCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 37531 0.7 0.38712
Target:  5'- uGCUCGGCGGGCugugAUCccCUCGcCGGCa- -3'
miRNA:   3'- -CGAGCCGCUCG----UAGcuGAGC-GUCGcc -5'
26261 3' -57.3 NC_005345.2 + 6830 0.7 0.360368
Target:  5'- --aUGGCGGGCGggaUCGACaugguccUCGCGGCGa -3'
miRNA:   3'- cgaGCCGCUCGU---AGCUG-------AGCGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 19954 0.69 0.414223
Target:  5'- aGCUUcccaGGCGcAGCcgGUCGuACUCGUucAGCGGg -3'
miRNA:   3'- -CGAG----CCGC-UCG--UAGC-UGAGCG--UCGCC- -5'
26261 3' -57.3 NC_005345.2 + 39114 0.69 0.399622
Target:  5'- cCUCGGCGAGCagcccGcaugcgcaguugaaaUCGGC-CGCGGCGa -3'
miRNA:   3'- cGAGCCGCUCG-----U---------------AGCUGaGCGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 11662 0.69 0.423513
Target:  5'- cGCcCGGCGGGaaCGUCGuaccGCUCGCccgcgcugcaGGCGGa -3'
miRNA:   3'- -CGaGCCGCUC--GUAGC----UGAGCG----------UCGCC- -5'
26261 3' -57.3 NC_005345.2 + 25699 0.69 0.439588
Target:  5'- cGCUCGGCGugaccgguccggacGGCGaaccCGACacccgggcgUCGCGGUGGu -3'
miRNA:   3'- -CGAGCCGC--------------UCGUa---GCUG---------AGCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 12359 0.69 0.432927
Target:  5'- -aUCGGCugcacgGGGCccgaCGcCUCGCAGCGGa -3'
miRNA:   3'- cgAGCCG------CUCGua--GCuGAGCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 43464 0.69 0.432927
Target:  5'- --gCGGCGAGUucgCGGCgcagCGCGGuCGGc -3'
miRNA:   3'- cgaGCCGCUCGua-GCUGa---GCGUC-GCC- -5'
26261 3' -57.3 NC_005345.2 + 4151 0.69 0.396024
Target:  5'- cGCUCGucgaGCGGGUGUCGACgcggcaggCGCucacggGGCGGc -3'
miRNA:   3'- -CGAGC----CGCUCGUAGCUGa-------GCG------UCGCC- -5'
26261 3' -57.3 NC_005345.2 + 45264 0.69 0.396024
Target:  5'- --aCuGCGAGCGUCGGCggagaGCAGCGc -3'
miRNA:   3'- cgaGcCGCUCGUAGCUGag---CGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 31938 0.69 0.396024
Target:  5'- aGCUCGGCGGGUG-CGGgUgCgGguGCGGg -3'
miRNA:   3'- -CGAGCCGCUCGUaGCUgA-G-CguCGCC- -5'
26261 3' -57.3 NC_005345.2 + 8734 0.69 0.405059
Target:  5'- cGCgucggUGGCGAGCG-CGACgacUGCAGCa- -3'
miRNA:   3'- -CGa----GCCGCUCGUaGCUGa--GCGUCGcc -5'
26261 3' -57.3 NC_005345.2 + 32594 0.69 0.405059
Target:  5'- cGCgaCGGUGAGCAgccacccggugUGACgcaGCAGCGGc -3'
miRNA:   3'- -CGa-GCCGCUCGUa----------GCUGag-CGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 42527 0.69 0.420713
Target:  5'- gGCUCGGCaccgacaucacGAGCAucguccgacacgagUCGACgaGCAGCGa -3'
miRNA:   3'- -CGAGCCG-----------CUCGU--------------AGCUGagCGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 25139 0.69 0.414223
Target:  5'- cCUCGGCGAGCG-CGAUcgCGCcgacgaacGGCGa -3'
miRNA:   3'- cGAGCCGCUCGUaGCUGa-GCG--------UCGCc -5'
26261 3' -57.3 NC_005345.2 + 4259 0.69 0.423513
Target:  5'- uGCUCGGCGAaCAcCGg--CGguGCGGg -3'
miRNA:   3'- -CGAGCCGCUcGUaGCugaGCguCGCC- -5'
26261 3' -57.3 NC_005345.2 + 24065 0.69 0.423513
Target:  5'- cGCguaCGGCGAGCcgAUCGgccggccguggcACUCGguGCGu -3'
miRNA:   3'- -CGa--GCCGCUCG--UAGC------------UGAGCguCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.