miRNA display CGI


Results 81 - 100 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26261 3' -57.3 NC_005345.2 + 41087 0.68 0.481738
Target:  5'- uGCUCGGCG-GCGagcUUGAUcUGCAGCu- -3'
miRNA:   3'- -CGAGCCGCuCGU---AGCUGaGCGUCGcc -5'
26261 3' -57.3 NC_005345.2 + 36665 0.68 0.481738
Target:  5'- aCUCGGCGAGCuccgCGAgaUCGUcGCGc -3'
miRNA:   3'- cGAGCCGCUCGua--GCUg-AGCGuCGCc -5'
26261 3' -57.3 NC_005345.2 + 22315 0.68 0.478732
Target:  5'- cGCUCGGCGcgccgggugccggcAGCAgugaugCGGCgaGCAGCGc -3'
miRNA:   3'- -CGAGCCGC--------------UCGUa-----GCUGagCGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 2900 0.68 0.471756
Target:  5'- cCUCGaCGAGCGgaUCGGCggaccggGCAGCGGc -3'
miRNA:   3'- cGAGCcGCUCGU--AGCUGag-----CGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 10851 0.68 0.491821
Target:  5'- aGCUgCGGUGGGCG--GACUgcCGCAcGCGGc -3'
miRNA:   3'- -CGA-GCCGCUCGUagCUGA--GCGU-CGCC- -5'
26261 3' -57.3 NC_005345.2 + 34516 0.68 0.471756
Target:  5'- cGCggucgaGGCGGGCcgCGGcCUCGCGGgCGu -3'
miRNA:   3'- -CGag----CCGCUCGuaGCU-GAGCGUC-GCc -5'
26261 3' -57.3 NC_005345.2 + 45532 0.68 0.46188
Target:  5'- cGCUUGcacugcGCGAGCAgggCGACagcggccgaggUCGgGGCGGg -3'
miRNA:   3'- -CGAGC------CGCUCGUa--GCUG-----------AGCgUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 3024 0.67 0.543573
Target:  5'- aGCcgggCGGCGgcAGCAU--GCUCGCuuGCGGg -3'
miRNA:   3'- -CGa---GCCGC--UCGUAgcUGAGCGu-CGCC- -5'
26261 3' -57.3 NC_005345.2 + 10072 0.67 0.553089
Target:  5'- cGUcgCGGCGAGCGUCcACUcgaucgccgccugCGUAGCGc -3'
miRNA:   3'- -CGa-GCCGCUCGUAGcUGA-------------GCGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 6986 0.67 0.512271
Target:  5'- aGCUgcUGGcCGGGCGcCGACagGCAGCGu -3'
miRNA:   3'- -CGA--GCC-GCUCGUaGCUGagCGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 37087 0.67 0.56372
Target:  5'- -gUCGGCGAGCGaugaacUCGgcgccggucuccaGCUCGgCAGgGGc -3'
miRNA:   3'- cgAGCCGCUCGU------AGC-------------UGAGC-GUCgCC- -5'
26261 3' -57.3 NC_005345.2 + 9176 0.67 0.543573
Target:  5'- aCUCGGCGAGCGUggCGAggaaUCGCGcuguuGcCGGa -3'
miRNA:   3'- cGAGCCGCUCGUA--GCUg---AGCGU-----C-GCC- -5'
26261 3' -57.3 NC_005345.2 + 1617 0.67 0.533063
Target:  5'- cGUUCGGUGAuGagGUCGG-UCGCGGCGa -3'
miRNA:   3'- -CGAGCCGCU-Cg-UAGCUgAGCGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 38319 0.67 0.512271
Target:  5'- aGCUCGGCGccGGC-UCGugUCuGCcGCaGGc -3'
miRNA:   3'- -CGAGCCGC--UCGuAGCugAG-CGuCG-CC- -5'
26261 3' -57.3 NC_005345.2 + 27569 0.67 0.553089
Target:  5'- cGUUCGGgGGGcCGUCGGgccguCUCGCGccaacguGCGGc -3'
miRNA:   3'- -CGAGCCgCUC-GUAGCU-----GAGCGU-------CGCC- -5'
26261 3' -57.3 NC_005345.2 + 25662 0.67 0.532016
Target:  5'- -gUCGGaCGAGCcgaagugAUCGGCcUGCGGCGa -3'
miRNA:   3'- cgAGCC-GCUCG-------UAGCUGaGCGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 39337 0.67 0.522627
Target:  5'- gGCaUCGGCG-GCAcCGGC-CGCgacacAGCGGc -3'
miRNA:   3'- -CG-AGCCGCuCGUaGCUGaGCG-----UCGCC- -5'
26261 3' -57.3 NC_005345.2 + 15963 0.67 0.522627
Target:  5'- cGUUCGGCGcuGCcaGUUGGCgaugugCGCGGCGu -3'
miRNA:   3'- -CGAGCCGCu-CG--UAGCUGa-----GCGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 37725 0.67 0.515369
Target:  5'- cGCUgCGGCGcggcgccggcuggucGGCGUCGucgaggucgagcuGCUCGCccgcaGGCGGc -3'
miRNA:   3'- -CGA-GCCGC---------------UCGUAGC-------------UGAGCG-----UCGCC- -5'
26261 3' -57.3 NC_005345.2 + 18027 0.67 0.512271
Target:  5'- cGC-CgGGCGAGCGcaggaacgCGGCcacgUUGCGGCGGg -3'
miRNA:   3'- -CGaG-CCGCUCGUa-------GCUG----AGCGUCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.