Results 61 - 80 of 131 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26261 | 3' | -57.3 | NC_005345.2 | + | 45161 | 0.68 | 0.452114 |
Target: 5'- gGCUCGuccgacCGGGCcUCGACgUCGCAGCc- -3' miRNA: 3'- -CGAGCc-----GCUCGuAGCUG-AGCGUCGcc -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 5596 | 0.68 | 0.452114 |
Target: 5'- cGgUCGGCGAGCuuGUCGGCgacgaGCucGGCGa -3' miRNA: 3'- -CgAGCCGCUCG--UAGCUGag---CG--UCGCc -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 35869 | 0.68 | 0.46188 |
Target: 5'- cGCacCGGCGAGCugcCGG--UGCAGCGGu -3' miRNA: 3'- -CGa-GCCGCUCGua-GCUgaGCGUCGCC- -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 13267 | 0.68 | 0.46188 |
Target: 5'- --cCGGCGAGCA---GCUCGuCGGCGa -3' miRNA: 3'- cgaGCCGCUCGUagcUGAGC-GUCGCc -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 45532 | 0.68 | 0.46188 |
Target: 5'- cGCUUGcacugcGCGAGCAgggCGACagcggccgaggUCGgGGCGGg -3' miRNA: 3'- -CGAGC------CGCUCGUa--GCUG-----------AGCgUCGCC- -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 2900 | 0.68 | 0.471756 |
Target: 5'- cCUCGaCGAGCGgaUCGGCggaccggGCAGCGGc -3' miRNA: 3'- cGAGCcGCUCGU--AGCUGag-----CGUCGCC- -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 34516 | 0.68 | 0.471756 |
Target: 5'- cGCggucgaGGCGGGCcgCGGcCUCGCGGgCGu -3' miRNA: 3'- -CGag----CCGCUCGuaGCU-GAGCGUC-GCc -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 16349 | 0.68 | 0.471756 |
Target: 5'- -gUCGGCG-GCAUCGcgGCcggCGCcGCGGu -3' miRNA: 3'- cgAGCCGCuCGUAGC--UGa--GCGuCGCC- -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 38043 | 0.68 | 0.471756 |
Target: 5'- aCUCuGUG-GCAUCGGaUCGCGGUGGc -3' miRNA: 3'- cGAGcCGCuCGUAGCUgAGCGUCGCC- -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 14791 | 0.68 | 0.471756 |
Target: 5'- cGCccCGGUGcGCuUCGACgucgaGCGGCGGg -3' miRNA: 3'- -CGa-GCCGCuCGuAGCUGag---CGUCGCC- -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 22315 | 0.68 | 0.478732 |
Target: 5'- cGCUCGGCGcgccgggugccggcAGCAgugaugCGGCgaGCAGCGc -3' miRNA: 3'- -CGAGCCGC--------------UCGUa-----GCUGagCGUCGCc -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 32516 | 0.68 | 0.481738 |
Target: 5'- uGC-CGGCGGGCGgccCGAUcUGC-GCGGg -3' miRNA: 3'- -CGaGCCGCUCGUa--GCUGaGCGuCGCC- -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 36665 | 0.68 | 0.481738 |
Target: 5'- aCUCGGCGAGCuccgCGAgaUCGUcGCGc -3' miRNA: 3'- cGAGCCGCUCGua--GCUg-AGCGuCGCc -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 41087 | 0.68 | 0.481738 |
Target: 5'- uGCUCGGCG-GCGagcUUGAUcUGCAGCu- -3' miRNA: 3'- -CGAGCCGCuCGU---AGCUGaGCGUCGcc -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 4360 | 0.68 | 0.481738 |
Target: 5'- cCUCgGGCGGGCGggCcGCUCGguGgGGg -3' miRNA: 3'- cGAG-CCGCUCGUa-GcUGAGCguCgCC- -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 8612 | 0.68 | 0.482741 |
Target: 5'- aGCUCGGCGAucacgaacguuccgGCGgcgucgcaguacaccUCGGCgccgaucgUCGCGGCGa -3' miRNA: 3'- -CGAGCCGCU--------------CGU---------------AGCUG--------AGCGUCGCc -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 2355 | 0.68 | 0.485759 |
Target: 5'- uGCUUGGCGGcGCAgcccggucgCGAcCUCGCGggcccaaggguguucGCGGg -3' miRNA: 3'- -CGAGCCGCU-CGUa--------GCU-GAGCGU---------------CGCC- -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 10851 | 0.68 | 0.491821 |
Target: 5'- aGCUgCGGUGGGCG--GACUgcCGCAcGCGGc -3' miRNA: 3'- -CGA-GCCGCUCGUagCUGA--GCGU-CGCC- -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 14907 | 0.68 | 0.491821 |
Target: 5'- aGCgggCGaaGCGGGCcgCGGCgcggcggcUGCAGCGGg -3' miRNA: 3'- -CGa--GC--CGCUCGuaGCUGa-------GCGUCGCC- -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 36777 | 0.68 | 0.491821 |
Target: 5'- gGgUCGGCGucGGCgAUCGGCacagcCGCAGCGc -3' miRNA: 3'- -CgAGCCGC--UCG-UAGCUGa----GCGUCGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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