miRNA display CGI


Results 81 - 100 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26261 3' -57.3 NC_005345.2 + 36777 0.68 0.491821
Target:  5'- gGgUCGGCGucGGCgAUCGGCacagcCGCAGCGc -3'
miRNA:   3'- -CgAGCCGC--UCG-UAGCUGa----GCGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 48199 0.68 0.497917
Target:  5'- uGCUCGGgGAGCAccuagugcgcgaccUCGACgacgugacgccggUCGaucuGCGGg -3'
miRNA:   3'- -CGAGCCgCUCGU--------------AGCUG-------------AGCgu--CGCC- -5'
26261 3' -57.3 NC_005345.2 + 27303 0.68 0.498936
Target:  5'- aGCUCGcccgcacgcaugccGCGcAGCAgUCGAUgucgCGUGGCGGg -3'
miRNA:   3'- -CGAGC--------------CGC-UCGU-AGCUGa---GCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 45080 0.68 0.500978
Target:  5'- gGCUCGGCGcaccgaGGCAuaccgugUCGgcGCUCGuCGGCGc -3'
miRNA:   3'- -CGAGCCGC------UCGU-------AGC--UGAGC-GUCGCc -5'
26261 3' -57.3 NC_005345.2 + 19414 0.68 0.500978
Target:  5'- aGCUCGGuCGGcugcgccGCGUCGG-UCGCAcCGGg -3'
miRNA:   3'- -CGAGCC-GCU-------CGUAGCUgAGCGUcGCC- -5'
26261 3' -57.3 NC_005345.2 + 40207 0.68 0.502
Target:  5'- aGCUCGGC-AGCuacGUCGAgaCGguGCcGGu -3'
miRNA:   3'- -CGAGCCGcUCG---UAGCUgaGCguCG-CC- -5'
26261 3' -57.3 NC_005345.2 + 37866 0.68 0.502
Target:  5'- gGC-CGGCGAgGCucaGGCccggacggUCGCGGCGGu -3'
miRNA:   3'- -CGaGCCGCU-CGuagCUG--------AGCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 18027 0.67 0.512271
Target:  5'- cGC-CgGGCGAGCGcaggaacgCGGCcacgUUGCGGCGGg -3'
miRNA:   3'- -CGaG-CCGCUCGUa-------GCUG----AGCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 38319 0.67 0.512271
Target:  5'- aGCUCGGCGccGGC-UCGugUCuGCcGCaGGc -3'
miRNA:   3'- -CGAGCCGC--UCGuAGCugAG-CGuCG-CC- -5'
26261 3' -57.3 NC_005345.2 + 24346 0.67 0.512271
Target:  5'- --aCGGCGGGaucCGGCUCGCGaagaccauGCGGu -3'
miRNA:   3'- cgaGCCGCUCguaGCUGAGCGU--------CGCC- -5'
26261 3' -57.3 NC_005345.2 + 2155 0.67 0.512271
Target:  5'- cGCUUGcCGAGCuuccacgcGUUGAC-CGUGGCGGg -3'
miRNA:   3'- -CGAGCcGCUCG--------UAGCUGaGCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 6986 0.67 0.512271
Target:  5'- aGCUgcUGGcCGGGCGcCGACagGCAGCGu -3'
miRNA:   3'- -CGA--GCC-GCUCGUaGCUGagCGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 12249 0.67 0.512271
Target:  5'- -gUCGaGCGAGCAggccCGGCUCGUu-CGGa -3'
miRNA:   3'- cgAGC-CGCUCGUa---GCUGAGCGucGCC- -5'
26261 3' -57.3 NC_005345.2 + 37725 0.67 0.515369
Target:  5'- cGCUgCGGCGcggcgccggcuggucGGCGUCGucgaggucgagcuGCUCGCccgcaGGCGGc -3'
miRNA:   3'- -CGA-GCCGC---------------UCGUAGC-------------UGAGCG-----UCGCC- -5'
26261 3' -57.3 NC_005345.2 + 36162 0.67 0.522627
Target:  5'- -aUCGGCGGGUc-CGGCgUGCAGCGu -3'
miRNA:   3'- cgAGCCGCUCGuaGCUGaGCGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 39337 0.67 0.522627
Target:  5'- gGCaUCGGCG-GCAcCGGC-CGCgacacAGCGGc -3'
miRNA:   3'- -CG-AGCCGCuCGUaGCUGaGCG-----UCGCC- -5'
26261 3' -57.3 NC_005345.2 + 15963 0.67 0.522627
Target:  5'- cGUUCGGCGcuGCcaGUUGGCgaugugCGCGGCGu -3'
miRNA:   3'- -CGAGCCGCu-CG--UAGCUGa-----GCGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 25662 0.67 0.532016
Target:  5'- -gUCGGaCGAGCcgaagugAUCGGCcUGCGGCGa -3'
miRNA:   3'- cgAGCC-GCUCG-------UAGCUGaGCGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 5027 0.67 0.533063
Target:  5'- aCUCGaCGAaCGUCGACgagCGCAGCa- -3'
miRNA:   3'- cGAGCcGCUcGUAGCUGa--GCGUCGcc -5'
26261 3' -57.3 NC_005345.2 + 1617 0.67 0.533063
Target:  5'- cGUUCGGUGAuGagGUCGG-UCGCGGCGa -3'
miRNA:   3'- -CGAGCCGCU-Cg-UAGCUgAGCGUCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.