miRNA display CGI


Results 101 - 120 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26261 3' -57.3 NC_005345.2 + 5027 0.67 0.533063
Target:  5'- aCUCGaCGAaCGUCGACgagCGCAGCa- -3'
miRNA:   3'- cGAGCcGCUcGUAGCUGa--GCGUCGcc -5'
26261 3' -57.3 NC_005345.2 + 1617 0.67 0.533063
Target:  5'- cGUUCGGUGAuGagGUCGG-UCGCGGCGa -3'
miRNA:   3'- -CGAGCCGCU-Cg-UAGCUgAGCGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 3024 0.67 0.543573
Target:  5'- aGCcgggCGGCGgcAGCAU--GCUCGCuuGCGGg -3'
miRNA:   3'- -CGa---GCCGC--UCGUAgcUGAGCGu-CGCC- -5'
26261 3' -57.3 NC_005345.2 + 9176 0.67 0.543573
Target:  5'- aCUCGGCGAGCGUggCGAggaaUCGCGcuguuGcCGGa -3'
miRNA:   3'- cGAGCCGCUCGUA--GCUg---AGCGU-----C-GCC- -5'
26261 3' -57.3 NC_005345.2 + 9878 0.67 0.543573
Target:  5'- uGCUCGaCGAGCAgcagCGggccgaACUCGgCGGCGa -3'
miRNA:   3'- -CGAGCcGCUCGUa---GC------UGAGC-GUCGCc -5'
26261 3' -57.3 NC_005345.2 + 24829 0.67 0.543573
Target:  5'- uGCUCGG-GuuCGaCGGCUCGCgcaAGCGGu -3'
miRNA:   3'- -CGAGCCgCucGUaGCUGAGCG---UCGCC- -5'
26261 3' -57.3 NC_005345.2 + 27569 0.67 0.553089
Target:  5'- cGUUCGGgGGGcCGUCGGgccguCUCGCGccaacguGCGGc -3'
miRNA:   3'- -CGAGCCgCUC-GUAGCU-----GAGCGU-------CGCC- -5'
26261 3' -57.3 NC_005345.2 + 10072 0.67 0.553089
Target:  5'- cGUcgCGGCGAGCGUCcACUcgaucgccgccugCGUAGCGc -3'
miRNA:   3'- -CGa-GCCGCUCGUAGcUGA-------------GCGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 28398 0.67 0.554149
Target:  5'- cGCcgCGGCG-GCAgCGGCagGCAggGCGGa -3'
miRNA:   3'- -CGa-GCCGCuCGUaGCUGagCGU--CGCC- -5'
26261 3' -57.3 NC_005345.2 + 31601 0.67 0.554149
Target:  5'- uGCUCGGCGcGGCccgCGGaUCGCAugGCGa -3'
miRNA:   3'- -CGAGCCGC-UCGua-GCUgAGCGU--CGCc -5'
26261 3' -57.3 NC_005345.2 + 37087 0.67 0.56372
Target:  5'- -gUCGGCGAGCGaugaacUCGgcgccggucuccaGCUCGgCAGgGGc -3'
miRNA:   3'- cgAGCCGCUCGU------AGC-------------UGAGC-GUCgCC- -5'
26261 3' -57.3 NC_005345.2 + 28145 0.67 0.569056
Target:  5'- gGC-CGGCGAacGCGUCGcccggucggcguucCUCGCcGCGGc -3'
miRNA:   3'- -CGaGCCGCU--CGUAGCu-------------GAGCGuCGCC- -5'
26261 3' -57.3 NC_005345.2 + 37233 0.66 0.575475
Target:  5'- -gUCGGCGgcgugccguaguAGCGggCGACg-GCGGCGGu -3'
miRNA:   3'- cgAGCCGC------------UCGUa-GCUGagCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 11570 0.66 0.575475
Target:  5'- cGCcCGGC-AGC-UCGACgacgggcgccUCGCGGUGGc -3'
miRNA:   3'- -CGaGCCGcUCGuAGCUG----------AGCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 7512 0.66 0.58621
Target:  5'- aUUCGGUGGGCGU--GCUgccgGCGGCGGu -3'
miRNA:   3'- cGAGCCGCUCGUAgcUGAg---CGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 5438 0.66 0.58621
Target:  5'- cUUCGGCGGcGCccggGUCGGC-CGUAGgGGc -3'
miRNA:   3'- cGAGCCGCU-CG----UAGCUGaGCGUCgCC- -5'
26261 3' -57.3 NC_005345.2 + 22048 0.66 0.58621
Target:  5'- aGCUCa-CGAGC--CGAC-CGCGGUGGg -3'
miRNA:   3'- -CGAGccGCUCGuaGCUGaGCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 18509 0.66 0.595903
Target:  5'- aGgUCGaGCGAguacgcgGCGUCGGCgucCGgGGCGGu -3'
miRNA:   3'- -CgAGC-CGCU-------CGUAGCUGa--GCgUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 10854 0.66 0.596982
Target:  5'- cGC-CGGCGAGguaguaGUCGACggGCcacugcaaGGCGGg -3'
miRNA:   3'- -CGaGCCGCUCg-----UAGCUGagCG--------UCGCC- -5'
26261 3' -57.3 NC_005345.2 + 45712 0.66 0.596982
Target:  5'- gGCg-GGCGGGgGUCuGCgugCGCAGCGu -3'
miRNA:   3'- -CGagCCGCUCgUAGcUGa--GCGUCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.