Results 81 - 100 of 131 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26261 | 3' | -57.3 | NC_005345.2 | + | 32594 | 0.69 | 0.405059 |
Target: 5'- cGCgaCGGUGAGCAgccacccggugUGACgcaGCAGCGGc -3' miRNA: 3'- -CGa-GCCGCUCGUa----------GCUGag-CGUCGCC- -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 8734 | 0.69 | 0.405059 |
Target: 5'- cGCgucggUGGCGAGCG-CGACgacUGCAGCa- -3' miRNA: 3'- -CGa----GCCGCUCGUaGCUGa--GCGUCGcc -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 39114 | 0.69 | 0.399622 |
Target: 5'- cCUCGGCGAGCagcccGcaugcgcaguugaaaUCGGC-CGCGGCGa -3' miRNA: 3'- cGAGCCGCUCG-----U---------------AGCUGaGCGUCGCc -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 45264 | 0.69 | 0.396024 |
Target: 5'- --aCuGCGAGCGUCGGCggagaGCAGCGc -3' miRNA: 3'- cgaGcCGCUCGUAGCUGag---CGUCGCc -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 31938 | 0.69 | 0.396024 |
Target: 5'- aGCUCGGCGGGUG-CGGgUgCgGguGCGGg -3' miRNA: 3'- -CGAGCCGCUCGUaGCUgA-G-CguCGCC- -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 4151 | 0.69 | 0.396024 |
Target: 5'- cGCUCGucgaGCGGGUGUCGACgcggcaggCGCucacggGGCGGc -3' miRNA: 3'- -CGAGC----CGCUCGUAGCUGa-------GCG------UCGCC- -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 42136 | 0.7 | 0.38712 |
Target: 5'- --cCGGCGAcccgGCGUCGA-UCGCAGCa- -3' miRNA: 3'- cgaGCCGCU----CGUAGCUgAGCGUCGcc -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 37531 | 0.7 | 0.38712 |
Target: 5'- uGCUCGGCGGGCugugAUCccCUCGcCGGCa- -3' miRNA: 3'- -CGAGCCGCUCG----UAGcuGAGC-GUCGcc -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 32805 | 0.7 | 0.38712 |
Target: 5'- uGCUCGGCGcguuccgcgaGGCAcUCGGgaaGCAGUGGg -3' miRNA: 3'- -CGAGCCGC----------UCGU-AGCUgagCGUCGCC- -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 15325 | 0.7 | 0.378348 |
Target: 5'- aGgUCGGU--GCGUCGGCcggggCGUAGCGGg -3' miRNA: 3'- -CgAGCCGcuCGUAGCUGa----GCGUCGCC- -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 44918 | 0.7 | 0.378348 |
Target: 5'- cGCagCGGCGAcCAUCGGCUCggcguaccGCAGCa- -3' miRNA: 3'- -CGa-GCCGCUcGUAGCUGAG--------CGUCGcc -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 22247 | 0.7 | 0.378348 |
Target: 5'- cGgUCGGCGAGCGcCGcCU-GCAGCGc -3' miRNA: 3'- -CgAGCCGCUCGUaGCuGAgCGUCGCc -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 39418 | 0.7 | 0.378348 |
Target: 5'- aGCgUCGGCGcGGUcgCGGCccgCGCGGCGcGg -3' miRNA: 3'- -CG-AGCCGC-UCGuaGCUGa--GCGUCGC-C- -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 27186 | 0.7 | 0.369712 |
Target: 5'- gGCaUCGGCGcgGGCcgUGAUcgGCAGCGGg -3' miRNA: 3'- -CG-AGCCGC--UCGuaGCUGagCGUCGCC- -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 23555 | 0.7 | 0.361211 |
Target: 5'- uGCUCGGCGuucuucggcAGCAcCGGCa-GCuGCGGg -3' miRNA: 3'- -CGAGCCGC---------UCGUaGCUGagCGuCGCC- -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 6830 | 0.7 | 0.360368 |
Target: 5'- --aUGGCGGGCGggaUCGACaugguccUCGCGGCGa -3' miRNA: 3'- cgaGCCGCUCGU---AGCUG-------AGCGUCGCc -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 8025 | 0.7 | 0.352847 |
Target: 5'- aGCUCGaCGGGC-UCGACcucgCGCAGCu- -3' miRNA: 3'- -CGAGCcGCUCGuAGCUGa---GCGUCGcc -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 22110 | 0.7 | 0.352847 |
Target: 5'- gGCUCgguGGCGAGCAgcacaGACUCGUcgacGUGGu -3' miRNA: 3'- -CGAG---CCGCUCGUag---CUGAGCGu---CGCC- -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 37587 | 0.71 | 0.344621 |
Target: 5'- gGCUgcaGGCGGGCGacCGGCUCGCGuuGCGa -3' miRNA: 3'- -CGAg--CCGCUCGUa-GCUGAGCGU--CGCc -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 30676 | 0.71 | 0.344621 |
Target: 5'- --gCGGCGAGCAucuUCGGgUCGCGGgaccCGGu -3' miRNA: 3'- cgaGCCGCUCGU---AGCUgAGCGUC----GCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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