miRNA display CGI


Results 61 - 80 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26261 3' -57.3 NC_005345.2 + 25662 0.67 0.532016
Target:  5'- -gUCGGaCGAGCcgaagugAUCGGCcUGCGGCGa -3'
miRNA:   3'- cgAGCC-GCUCG-------UAGCUGaGCGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 25699 0.69 0.439588
Target:  5'- cGCUCGGCGugaccgguccggacGGCGaaccCGACacccgggcgUCGCGGUGGu -3'
miRNA:   3'- -CGAGCCGC--------------UCGUa---GCUG---------AGCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 26055 0.66 0.618604
Target:  5'- cCUCGGCGAGCGcCuGCUCGaacuGGCu- -3'
miRNA:   3'- cGAGCCGCUCGUaGcUGAGCg---UCGcc -5'
26261 3' -57.3 NC_005345.2 + 27186 0.7 0.369712
Target:  5'- gGCaUCGGCGcgGGCcgUGAUcgGCAGCGGg -3'
miRNA:   3'- -CG-AGCCGC--UCGuaGCUGagCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 27303 0.68 0.498936
Target:  5'- aGCUCGcccgcacgcaugccGCGcAGCAgUCGAUgucgCGUGGCGGg -3'
miRNA:   3'- -CGAGC--------------CGC-UCGU-AGCUGa---GCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 27534 0.75 0.178369
Target:  5'- cGCacgCGGCGAucacccgcgGCAUCGGCUCGUcggaccccGGCGGc -3'
miRNA:   3'- -CGa--GCCGCU---------CGUAGCUGAGCG--------UCGCC- -5'
26261 3' -57.3 NC_005345.2 + 27569 0.67 0.553089
Target:  5'- cGUUCGGgGGGcCGUCGGgccguCUCGCGccaacguGCGGc -3'
miRNA:   3'- -CGAGCCgCUC-GUAGCU-----GAGCGU-------CGCC- -5'
26261 3' -57.3 NC_005345.2 + 27904 0.75 0.193147
Target:  5'- aGCUCGGCGAcGCGUUcgGugUCGCuuccgagcGCGGu -3'
miRNA:   3'- -CGAGCCGCU-CGUAG--CugAGCGu-------CGCC- -5'
26261 3' -57.3 NC_005345.2 + 28145 0.67 0.569056
Target:  5'- gGC-CGGCGAacGCGUCGcccggucggcguucCUCGCcGCGGc -3'
miRNA:   3'- -CGaGCCGCU--CGUAGCu-------------GAGCGuCGCC- -5'
26261 3' -57.3 NC_005345.2 + 28398 0.67 0.554149
Target:  5'- cGCcgCGGCG-GCAgCGGCagGCAggGCGGa -3'
miRNA:   3'- -CGa-GCCGCuCGUaGCUGagCGU--CGCC- -5'
26261 3' -57.3 NC_005345.2 + 28758 0.66 0.618604
Target:  5'- --aCGGCGGGgc-CGGCUCGguGaCGGu -3'
miRNA:   3'- cgaGCCGCUCguaGCUGAGCguC-GCC- -5'
26261 3' -57.3 NC_005345.2 + 29810 0.72 0.290941
Target:  5'- cGCUcgccccCGGCGAGCAgccCGGCaUCGUcGCGGc -3'
miRNA:   3'- -CGA------GCCGCUCGUa--GCUG-AGCGuCGCC- -5'
26261 3' -57.3 NC_005345.2 + 30161 0.76 0.1518
Target:  5'- cGCUCGGgccgaggcuCGGGCAUCGACgCGUGGCGc -3'
miRNA:   3'- -CGAGCC---------GCUCGUAGCUGaGCGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 30226 0.73 0.237871
Target:  5'- cGCgcauccggCGGUGAGCcgGUCGACgaCGguGCGGg -3'
miRNA:   3'- -CGa-------GCCGCUCG--UAGCUGa-GCguCGCC- -5'
26261 3' -57.3 NC_005345.2 + 30676 0.71 0.344621
Target:  5'- --gCGGCGAGCAucuUCGGgUCGCGGgaccCGGu -3'
miRNA:   3'- cgaGCCGCUCGU---AGCUgAGCGUC----GCC- -5'
26261 3' -57.3 NC_005345.2 + 31601 0.67 0.554149
Target:  5'- uGCUCGGCGcGGCccgCGGaUCGCAugGCGa -3'
miRNA:   3'- -CGAGCCGC-UCGua-GCUgAGCGU--CGCc -5'
26261 3' -57.3 NC_005345.2 + 31938 0.69 0.396024
Target:  5'- aGCUCGGCGGGUG-CGGgUgCgGguGCGGg -3'
miRNA:   3'- -CGAGCCGCUCGUaGCUgA-G-CguCGCC- -5'
26261 3' -57.3 NC_005345.2 + 32516 0.68 0.481738
Target:  5'- uGC-CGGCGGGCGgccCGAUcUGC-GCGGg -3'
miRNA:   3'- -CGaGCCGCUCGUa--GCUGaGCGuCGCC- -5'
26261 3' -57.3 NC_005345.2 + 32594 0.69 0.405059
Target:  5'- cGCgaCGGUGAGCAgccacccggugUGACgcaGCAGCGGc -3'
miRNA:   3'- -CGa-GCCGCUCGUa----------GCUGag-CGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 32805 0.7 0.38712
Target:  5'- uGCUCGGCGcguuccgcgaGGCAcUCGGgaaGCAGUGGg -3'
miRNA:   3'- -CGAGCCGC----------UCGU-AGCUgagCGUCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.