miRNA display CGI


Results 81 - 100 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26261 3' -57.3 NC_005345.2 + 33115 0.71 0.328586
Target:  5'- cGCUCGGCGA-CAaCGACggGCuGUGGg -3'
miRNA:   3'- -CGAGCCGCUcGUaGCUGagCGuCGCC- -5'
26261 3' -57.3 NC_005345.2 + 33510 0.71 0.313109
Target:  5'- -aUCGGCGAGCAguccgGGCagGCGGCGa -3'
miRNA:   3'- cgAGCCGCUCGUag---CUGagCGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 33556 0.71 0.334933
Target:  5'- cGCUCGGCGcaGGCcugaaaaccgGACUCGCGGCu- -3'
miRNA:   3'- -CGAGCCGC--UCGuag-------CUGAGCGUCGcc -5'
26261 3' -57.3 NC_005345.2 + 33741 0.65 0.626186
Target:  5'- gGCUaCGGCGAGUcgaucgaccaggucAaCGACUCcCuGCGGa -3'
miRNA:   3'- -CGA-GCCGCUCG--------------UaGCUGAGcGuCGCC- -5'
26261 3' -57.3 NC_005345.2 + 34516 0.68 0.471756
Target:  5'- cGCggucgaGGCGGGCcgCGGcCUCGCGGgCGu -3'
miRNA:   3'- -CGag----CCGCUCGuaGCU-GAGCGUC-GCc -5'
26261 3' -57.3 NC_005345.2 + 34739 0.74 0.214511
Target:  5'- cGCcCGGCaGGCGUCGGCgacgUGCAGcCGGa -3'
miRNA:   3'- -CGaGCCGcUCGUAGCUGa---GCGUC-GCC- -5'
26261 3' -57.3 NC_005345.2 + 35175 0.72 0.270021
Target:  5'- -gUCGGCGcucaAGCccgcguUCGACgggaUCGCAGCGGg -3'
miRNA:   3'- cgAGCCGC----UCGu-----AGCUG----AGCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 35842 0.66 0.596982
Target:  5'- gGCgCGGCGGGUGgcUCGGUUCG-GGCGGg -3'
miRNA:   3'- -CGaGCCGCUCGU--AGCUGAGCgUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 35869 0.68 0.46188
Target:  5'- cGCacCGGCGAGCugcCGG--UGCAGCGGu -3'
miRNA:   3'- -CGa-GCCGCUCGua-GCUgaGCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 36028 0.66 0.596982
Target:  5'- cGCaCGGCGGGCGUuCGAggugaaagCGCGGCa- -3'
miRNA:   3'- -CGaGCCGCUCGUA-GCUga------GCGUCGcc -5'
26261 3' -57.3 NC_005345.2 + 36088 0.72 0.270699
Target:  5'- uGCUCGGCGGGCugaaagacaagguccUCGACgcggccaagUCGCucuucGGCGGg -3'
miRNA:   3'- -CGAGCCGCUCGu--------------AGCUG---------AGCG-----UCGCC- -5'
26261 3' -57.3 NC_005345.2 + 36162 0.67 0.522627
Target:  5'- -aUCGGCGGGUc-CGGCgUGCAGCGu -3'
miRNA:   3'- cgAGCCGCUCGuaGCUGaGCGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 36339 0.73 0.231839
Target:  5'- gGCgaacCGGCGGGCcgagCGGCUCG-GGCGGg -3'
miRNA:   3'- -CGa---GCCGCUCGua--GCUGAGCgUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 36665 0.68 0.481738
Target:  5'- aCUCGGCGAGCuccgCGAgaUCGUcGCGc -3'
miRNA:   3'- cGAGCCGCUCGua--GCUg-AGCGuCGCc -5'
26261 3' -57.3 NC_005345.2 + 36777 0.68 0.491821
Target:  5'- gGgUCGGCGucGGCgAUCGGCacagcCGCAGCGc -3'
miRNA:   3'- -CgAGCCGC--UCG-UAGCUGa----GCGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 37087 0.67 0.56372
Target:  5'- -gUCGGCGAGCGaugaacUCGgcgccggucuccaGCUCGgCAGgGGc -3'
miRNA:   3'- cgAGCCGCUCGU------AGC-------------UGAGC-GUCgCC- -5'
26261 3' -57.3 NC_005345.2 + 37233 0.66 0.575475
Target:  5'- -gUCGGCGgcgugccguaguAGCGggCGACg-GCGGCGGu -3'
miRNA:   3'- cgAGCCGC------------UCGUa-GCUGagCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 37531 0.7 0.38712
Target:  5'- uGCUCGGCGGGCugugAUCccCUCGcCGGCa- -3'
miRNA:   3'- -CGAGCCGCUCG----UAGcuGAGC-GUCGcc -5'
26261 3' -57.3 NC_005345.2 + 37587 0.71 0.344621
Target:  5'- gGCUgcaGGCGGGCGacCGGCUCGCGuuGCGa -3'
miRNA:   3'- -CGAg--CCGCUCGUa-GCUGAGCGU--CGCc -5'
26261 3' -57.3 NC_005345.2 + 37631 0.66 0.618604
Target:  5'- uGCUCauucGUGAGCGgcugcagucCGGCgUCGguGCGGg -3'
miRNA:   3'- -CGAGc---CGCUCGUa--------GCUG-AGCguCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.